Wall clock time and date at job start Thu Apr 9 2020 12:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99643 * 2 1 4 4 H 1.48505 * 109.46821 * 269.99669 * 3 2 1 5 5 H 1.48500 * 109.47045 * 29.99252 * 3 2 1 6 6 H 1.48494 * 109.47297 * 149.99707 * 3 2 1 7 7 C 1.37878 * 120.00682 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99824 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99475 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40207 * 66.46042 * 9 7 2 11 11 O 1.42098 * 106.40144 * 293.53408 * 9 7 2 12 12 N 1.65598 * 107.21293 * 179.97438 * 9 7 2 13 13 C 1.50621 * 137.64456 * 90.00292 * 12 9 7 14 14 C 1.49904 * 80.15082 * 134.12475 * 13 12 9 15 15 H 1.08998 * 114.14116 * 289.29694 * 14 13 12 16 16 C 1.51657 * 129.40010 * 130.56947 * 14 13 12 17 17 N 1.49896 * 102.18198 * 229.62631 * 16 14 13 18 18 C 1.49446 * 106.55046 * 26.67536 * 17 16 14 19 19 C 1.42255 * 137.64972 * 269.99817 * 12 9 7 20 20 H 1.08996 * 111.13387 * 111.47543 * 19 12 9 21 21 H 0.96991 * 120.00187 * 0.02562 * 1 2 3 22 22 H 1.08998 * 114.73934 * 21.31380 * 13 12 9 23 23 H 1.09000 * 114.78396 * 246.93491 * 13 12 9 24 24 H 1.08992 * 110.86460 * 111.45290 * 16 14 13 25 25 H 1.09002 * 110.86282 * 347.79602 * 16 14 13 26 26 H 1.00905 * 110.99825 * 265.71236 * 17 16 14 27 27 H 1.08999 * 110.32928 * 127.33352 * 18 17 16 28 28 H 1.08998 * 110.32325 * 249.55200 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1938 0.0010 9 16 1.1237 -2.7200 0.0005 10 8 0.4521 -2.7955 -1.2494 11 8 0.4513 -2.7950 1.2501 12 7 2.2486 -3.9352 0.0005 13 6 3.0047 -4.7521 1.0153 14 6 2.5686 -5.8416 0.0826 15 1 1.4999 -6.0540 0.1139 16 6 3.3856 -6.9518 -0.5497 17 7 2.9990 -6.8459 -1.9940 18 6 2.5958 -5.4253 -2.2237 19 6 2.9628 -4.7068 -0.9578 20 1 4.0247 -4.4613 -0.9475 21 1 -0.4850 0.8400 -0.0004 22 1 2.5475 -4.7880 2.0041 23 1 4.0797 -4.5731 1.0367 24 1 3.1026 -7.9224 -0.1423 25 1 4.4526 -6.7711 -0.4193 26 1 2.2422 -7.4765 -2.2129 27 1 3.1439 -5.0080 -3.0684 28 1 1.5219 -5.3601 -2.3986 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239130848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:12 Heat of formation + Delta-G solvation = -16.851977 kcal Electronic energy + Delta-G solvation = -14987.376740 eV Core-core repulsion = 12360.281496 eV Total energy + Delta-G solvation = -2627.095244 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.33541 -37.45218 -36.23684 -36.14962 -35.22505 -30.23361 -28.40693 -28.06815 -25.94922 -22.67214 -21.77464 -20.63067 -18.87898 -18.03938 -17.29485 -16.98684 -16.41036 -16.19546 -15.82983 -15.25674 -14.82022 -14.30868 -14.05799 -13.66503 -13.37610 -13.06494 -13.02256 -12.59747 -12.59004 -12.53901 -12.34832 -12.20785 -11.93467 -11.30773 -11.09608 -10.73420 -9.74733 -9.44571 -8.77071 -7.54780 0.15959 1.28175 1.29735 1.45994 2.11901 2.29317 2.51224 2.91829 3.30834 3.61474 3.68696 3.82126 4.03873 4.26055 4.31835 4.44468 4.69678 4.81494 4.85831 4.93003 5.01317 5.17682 5.32177 5.36344 5.52008 5.68803 5.89192 6.39504 6.72084 8.15358 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.046400 B = 0.008594 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.302192 B = 3257.266823 C = 3318.991740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.066 3.934 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.247 1.247 7 C -1.048 5.048 8 H 0.115 0.885 9 S 2.726 3.274 10 O -1.040 7.040 11 O -1.039 7.039 12 N -1.037 6.037 13 C 0.157 3.843 14 C -0.149 4.149 15 H 0.079 0.921 16 C 0.063 3.937 17 N -0.664 5.664 18 C 0.048 3.952 19 C 0.071 3.929 20 H 0.114 0.886 21 H 0.299 0.701 22 H 0.091 0.909 23 H 0.132 0.868 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.348 0.652 27 H 0.092 0.908 28 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.153 -10.390 0.020 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.811 3.189 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.170 1.170 7 C -1.181 5.181 8 H 0.134 0.866 9 S 2.832 3.168 10 O -1.031 7.031 11 O -1.029 7.029 12 N -0.876 5.876 13 C 0.035 3.965 14 C -0.172 4.172 15 H 0.098 0.902 16 C -0.067 4.067 17 N -0.293 5.293 18 C -0.081 4.081 19 C -0.038 4.038 20 H 0.131 0.869 21 H 0.109 0.891 22 H 0.110 0.890 23 H 0.150 0.850 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.163 0.837 27 H 0.110 0.890 28 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.505 -10.214 -0.282 13.955 hybrid contribution -0.802 1.682 0.225 1.877 sum 8.703 -8.531 -0.057 12.187 Atomic orbital electron populations 1.69988 1.08856 1.32399 1.41592 1.26104 0.95438 1.05599 0.87456 0.85096 0.79145 0.74594 0.80107 1.17844 1.18437 1.17004 1.31122 1.07054 1.13377 1.66580 0.86638 0.99681 0.72935 0.72896 0.71336 1.93288 1.74580 1.88240 1.46958 1.93288 1.74467 1.88279 1.46894 1.60961 1.58021 1.51516 1.17113 1.22688 0.98086 0.84171 0.91603 1.24903 1.00715 0.93650 0.97958 0.90237 1.22543 1.00619 0.97719 0.85842 1.63750 1.41911 1.02938 1.20723 1.21987 0.99521 0.89977 0.96658 1.22701 0.96315 0.90410 0.94371 0.86859 0.89056 0.89032 0.85030 0.88445 0.87590 0.83687 0.88955 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.24 13.19 21.45 0.28 -54.96 15 2 C 0.07 3.81 5.46 84.65 0.46 4.28 15 3 Si 0.99 42.32 29.54 68.60 2.03 44.35 15 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 15 5 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 6 H -0.25 -9.78 7.11 99.48 0.71 -9.07 15 7 C -1.05 -60.11 9.75 67.73 0.66 -59.45 15 8 H 0.12 6.00 7.81 -2.91 -0.02 5.97 15 9 S 2.73 153.74 5.56 -56.49 -0.31 153.42 15 10 O -1.04 -65.15 18.02 -128.00 -2.31 -67.46 15 11 O -1.04 -64.54 18.02 -128.00 -2.31 -66.85 15 12 N -1.04 -42.43 3.88 -843.48 -3.27 -45.70 15 13 C 0.16 4.40 8.87 73.48 0.65 5.06 15 14 C -0.15 -3.90 4.59 -8.22 -0.04 -3.94 15 15 H 0.08 2.44 8.10 -2.39 -0.02 2.42 15 16 C 0.06 1.14 7.36 85.28 0.63 1.77 15 17 N -0.66 -14.69 7.62 -507.52 -3.87 -18.56 15 18 C 0.05 1.44 7.34 84.88 0.62 2.06 15 19 C 0.07 2.28 5.06 35.87 0.18 2.46 15 20 H 0.11 3.02 7.49 -2.39 -0.02 3.01 15 21 H 0.30 16.49 8.31 -92.71 -0.77 15.72 15 22 H 0.09 2.53 8.14 -2.39 -0.02 2.51 15 23 H 0.13 2.63 7.60 -2.39 -0.02 2.61 15 24 H 0.10 1.32 8.14 -2.39 -0.02 1.30 15 25 H 0.11 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.35 6.71 8.94 -89.69 -0.80 5.91 15 27 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 28 H 0.04 1.28 8.14 -2.39 -0.02 1.27 15 Total: -1.00 -80.72 254.53 -6.21 -86.94 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.37 Total: 16.58 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 3.17 Total: -47.76 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -6.86 Total: -119.22 kcal Atomic # 8 Polarization: -129.70 SS G_CDS: -4.61 Total: -134.31 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 153.74 SS G_CDS: -0.31 Total: 153.42 kcal Total: -80.72 -6.21 -86.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239130848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.083 kcal (2) G-P(sol) polarization free energy of solvation -80.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds