Wall clock time and date at job start Thu Apr 9 2020 12:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99652 * 2 1 4 4 H 1.48493 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47285 * 300.00235 * 3 2 1 6 6 H 1.48499 * 109.47140 * 60.00006 * 3 2 1 7 7 C 1.37874 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99712 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99867 * 359.97438 * 7 2 1 10 10 O 1.42092 * 106.40321 * 66.46196 * 9 7 2 11 11 O 1.42104 * 106.40198 * 293.54038 * 9 7 2 12 12 N 1.65603 * 107.21644 * 180.02562 * 9 7 2 13 13 C 1.47403 * 134.15109 * 90.00119 * 12 9 7 14 14 C 1.53676 * 86.72222 * 156.90930 * 13 12 9 15 15 H 1.09002 * 116.58105 * 140.88522 * 14 13 12 16 16 C 1.54705 * 113.27339 * 278.62271 * 14 13 12 17 17 N 1.49826 * 102.77949 * 128.53486 * 16 14 13 18 18 C 1.47869 * 106.17757 * 321.32459 * 17 16 14 19 19 C 1.47570 * 134.15271 * 269.96847 * 12 9 7 20 20 H 1.09005 * 116.35224 * 84.60346 * 19 12 9 21 21 H 0.96996 * 120.00564 * 359.97438 * 1 2 3 22 22 H 1.08998 * 113.67234 * 42.45100 * 13 12 9 23 23 H 1.09001 * 113.66714 * 271.36208 * 13 12 9 24 24 H 1.08996 * 110.63812 * 248.07280 * 16 14 13 25 25 H 1.09003 * 110.63578 * 11.11799 * 16 14 13 26 26 H 1.00904 * 110.60530 * 81.83262 * 17 16 14 27 27 H 1.09003 * 109.90330 * 266.04961 * 18 17 16 28 28 H 1.08991 * 110.06285 * 144.87381 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 16 1.1237 -2.7199 -0.0005 10 8 0.4511 -2.7950 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2486 -3.9353 -0.0005 13 6 2.9460 -4.6888 1.0571 14 6 3.1507 -5.7958 0.0110 15 1 4.1125 -6.3083 0.0250 16 6 1.9123 -6.7060 -0.1661 17 7 1.6967 -6.6875 -1.6487 18 6 1.9802 -5.3046 -2.0890 19 6 2.9464 -4.6901 -1.0593 20 1 3.8440 -4.2287 -1.4710 21 1 -0.4851 0.8400 0.0004 22 1 2.2995 -4.9824 1.8841 23 1 3.8739 -4.2221 1.3876 24 1 2.1188 -7.7113 0.2010 25 1 1.0470 -6.2805 0.3421 26 1 2.3108 -7.3453 -2.1051 27 1 1.0555 -4.7282 -2.1203 28 1 2.4451 -5.3139 -3.0747 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239130853.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:14 Heat of formation + Delta-G solvation = -45.852786 kcal Electronic energy + Delta-G solvation = -15141.063971 eV Core-core repulsion = 12512.711158 eV Total energy + Delta-G solvation = -2628.352813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.067 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.07972 -35.20388 -34.17814 -33.90739 -33.07066 -29.19049 -26.94483 -26.09092 -24.51083 -21.66092 -19.56419 -18.56526 -17.33727 -16.49371 -15.78583 -15.05547 -14.99870 -14.58479 -13.90831 -13.56754 -13.31538 -12.58900 -12.29480 -12.00286 -11.58288 -11.47663 -11.23867 -11.15240 -11.01319 -10.59468 -10.35329 -10.26235 -10.16126 -9.79784 -9.25801 -8.96876 -8.46816 -8.23489 -6.69186 -5.31379 2.22430 3.04705 3.12574 3.19780 4.02184 4.28382 4.38168 4.56749 4.64143 5.15950 5.25294 5.31759 5.45579 5.55209 5.70359 5.79619 5.91470 5.94211 6.03793 6.15653 6.42485 6.66415 6.81687 7.15463 7.31768 7.36420 7.55199 7.98563 8.89386 10.24169 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.047352 B = 0.009186 C = 0.009015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.173327 B = 3047.403097 C = 3105.208263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.271 1.271 7 C -1.024 5.024 8 H 0.100 0.900 9 S 2.730 3.270 10 O -0.996 6.996 11 O -1.001 7.001 12 N -1.031 6.031 13 C 0.137 3.863 14 C -0.163 4.163 15 H 0.094 0.906 16 C 0.058 3.942 17 N -0.668 5.668 18 C 0.019 3.981 19 C 0.126 3.874 20 H 0.100 0.900 21 H 0.290 0.710 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.329 0.671 27 H 0.111 0.889 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 -9.394 -0.858 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.157 5.157 8 H 0.118 0.882 9 S 2.832 3.168 10 O -0.987 6.987 11 O -0.992 6.992 12 N -0.867 5.867 13 C 0.010 3.990 14 C -0.185 4.185 15 H 0.112 0.888 16 C -0.071 4.071 17 N -0.293 5.293 18 C -0.111 4.111 19 C 0.017 3.983 20 H 0.118 0.882 21 H 0.101 0.899 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.144 0.856 27 H 0.129 0.871 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.304 -9.246 -0.871 11.224 hybrid contribution 2.105 1.565 0.103 2.624 sum 8.409 -7.681 -0.768 11.415 Atomic orbital electron populations 1.69901 1.06765 1.30636 1.40296 1.24765 0.94474 1.00822 0.88515 0.86137 0.80394 0.80446 0.78595 1.18709 1.19553 1.19567 1.30730 1.06117 1.12241 1.66608 0.88198 1.00083 0.71707 0.72171 0.72801 1.93326 1.72428 1.87358 1.45597 1.93355 1.72443 1.87466 1.45919 1.60735 1.58896 1.54006 1.13038 1.22236 0.96290 0.89028 0.91439 1.24785 0.99809 0.95979 0.97913 0.88813 1.23138 0.96077 0.98409 0.89438 1.63219 1.55777 1.05811 1.04535 1.23254 1.01358 0.89597 0.96891 1.23531 0.94818 0.89974 0.89977 0.88197 0.89925 0.90283 0.90734 0.90434 0.89754 0.85646 0.87094 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.38 13.19 55.43 0.73 -24.65 15 2 C 0.13 3.76 5.46 -17.82 -0.10 3.67 15 3 Si 0.92 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 15 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.27 -5.92 7.11 56.52 0.40 -5.51 15 7 C -1.02 -28.97 9.75 30.60 0.30 -28.67 15 8 H 0.10 2.61 7.81 -52.48 -0.41 2.20 15 9 S 2.73 74.48 5.50 -107.50 -0.59 73.88 15 10 O -1.00 -29.33 15.88 -57.17 -0.91 -30.24 15 11 O -1.00 -30.17 17.98 -57.17 -1.03 -31.20 15 12 N -1.03 -21.23 3.62 -108.15 -0.39 -21.62 15 13 C 0.14 2.19 8.35 -3.20 -0.03 2.17 15 14 C -0.16 -2.16 5.22 -88.21 -0.46 -2.62 15 15 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 16 C 0.06 0.80 7.16 -1.29 -0.01 0.79 15 17 N -0.67 -9.62 7.54 -109.23 -0.82 -10.44 15 18 C 0.02 0.32 7.27 -2.77 -0.02 0.30 15 19 C 0.13 2.06 5.61 -65.64 -0.37 1.70 15 20 H 0.10 1.44 8.14 -51.93 -0.42 1.02 15 21 H 0.29 7.79 8.31 -40.82 -0.34 7.45 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.82 15 23 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.08 1.39 7.85 -51.93 -0.41 0.98 15 26 H 0.33 3.67 8.91 -39.29 -0.35 3.32 15 27 H 0.11 2.34 5.94 -51.93 -0.31 2.04 15 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 LS Contribution 251.05 15.07 3.78 3.78 Total: -1.00 -35.62 251.05 -8.08 -43.70 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.15 Total: 3.55 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -0.68 Total: -22.66 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.48 Total: -56.72 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -1.94 Total: -61.44 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 74.48 SS G_CDS: -0.59 Total: 73.88 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -35.62 -8.08 -43.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239130853.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.156 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds