Wall clock time and date at job start Thu Apr 9 2020 12:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99652 * 2 1 4 4 H 1.48493 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47285 * 300.00235 * 3 2 1 6 6 H 1.48499 * 109.47140 * 60.00006 * 3 2 1 7 7 C 1.37874 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99712 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99867 * 359.97438 * 7 2 1 10 10 O 1.42092 * 106.40321 * 66.46196 * 9 7 2 11 11 O 1.42104 * 106.40198 * 293.54038 * 9 7 2 12 12 N 1.65603 * 107.21644 * 180.02562 * 9 7 2 13 13 C 1.47403 * 134.15109 * 90.00119 * 12 9 7 14 14 C 1.53676 * 86.72222 * 156.90930 * 13 12 9 15 15 H 1.09002 * 116.58105 * 140.88522 * 14 13 12 16 16 C 1.54705 * 113.27339 * 278.62271 * 14 13 12 17 17 N 1.49826 * 102.77949 * 128.53486 * 16 14 13 18 18 C 1.47869 * 106.17757 * 321.32459 * 17 16 14 19 19 C 1.47570 * 134.15271 * 269.96847 * 12 9 7 20 20 H 1.09005 * 116.35224 * 84.60346 * 19 12 9 21 21 H 0.96996 * 120.00564 * 359.97438 * 1 2 3 22 22 H 1.08998 * 113.67234 * 42.45100 * 13 12 9 23 23 H 1.09001 * 113.66714 * 271.36208 * 13 12 9 24 24 H 1.08996 * 110.63812 * 248.07280 * 16 14 13 25 25 H 1.09003 * 110.63578 * 11.11799 * 16 14 13 26 26 H 1.00904 * 110.60530 * 81.83262 * 17 16 14 27 27 H 1.09003 * 109.90330 * 266.04961 * 18 17 16 28 28 H 1.08991 * 110.06285 * 144.87381 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 16 1.1237 -2.7199 -0.0005 10 8 0.4511 -2.7950 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2486 -3.9353 -0.0005 13 6 2.9460 -4.6888 1.0571 14 6 3.1507 -5.7958 0.0110 15 1 4.1125 -6.3083 0.0250 16 6 1.9123 -6.7060 -0.1661 17 7 1.6967 -6.6875 -1.6487 18 6 1.9802 -5.3046 -2.0890 19 6 2.9464 -4.6901 -1.0593 20 1 3.8440 -4.2287 -1.4710 21 1 -0.4851 0.8400 0.0004 22 1 2.2995 -4.9824 1.8841 23 1 3.8739 -4.2221 1.3876 24 1 2.1188 -7.7113 0.2010 25 1 1.0470 -6.2805 0.3421 26 1 2.3108 -7.3453 -2.1051 27 1 1.0555 -4.7282 -2.1203 28 1 2.4451 -5.3139 -3.0747 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239130853.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:13 Heat of formation + Delta-G solvation = -77.666563 kcal Electronic energy + Delta-G solvation = -15142.443520 eV Core-core repulsion = 12512.711158 eV Total energy + Delta-G solvation = -2629.732362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.067 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34401 -37.41081 -36.15904 -35.45674 -35.19830 -30.43874 -28.43149 -28.15981 -25.76882 -22.94247 -21.17616 -20.31082 -18.85330 -18.42693 -17.40153 -16.78205 -16.70254 -16.09501 -15.72202 -15.16806 -14.81915 -14.10886 -13.96739 -13.67391 -13.29704 -13.06674 -12.90055 -12.62360 -12.55385 -12.48901 -12.32389 -12.14278 -11.58999 -11.34352 -11.30816 -10.98327 -9.89348 -9.56477 -8.77858 -7.53422 0.26664 1.29055 1.29218 1.47649 2.16288 2.52570 2.71668 3.20004 3.36063 3.78237 3.86452 3.99021 4.07712 4.15368 4.37568 4.48322 4.69858 4.73643 4.82837 4.97063 5.17037 5.20852 5.30759 5.48991 5.68478 5.71761 5.93809 6.61946 6.73358 8.16932 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.047352 B = 0.009186 C = 0.009015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.173327 B = 3047.403097 C = 3105.208263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.066 3.934 3 Si 0.994 3.006 4 H -0.247 1.247 5 H -0.257 1.257 6 H -0.258 1.258 7 C -1.047 5.047 8 H 0.116 0.884 9 S 2.732 3.268 10 O -1.034 7.034 11 O -1.047 7.047 12 N -1.044 6.044 13 C 0.124 3.876 14 C -0.125 4.125 15 H 0.150 0.850 16 C 0.053 3.947 17 N -0.676 5.676 18 C 0.016 3.984 19 C 0.112 3.888 20 H 0.126 0.874 21 H 0.299 0.701 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.044 0.956 26 H 0.354 0.646 27 H 0.057 0.943 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.524 -10.177 -0.979 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.147 4.147 3 Si 0.811 3.189 4 H -0.170 1.170 5 H -0.182 1.182 6 H -0.182 1.182 7 C -1.180 5.180 8 H 0.134 0.866 9 S 2.836 3.164 10 O -1.025 7.025 11 O -1.037 7.037 12 N -0.884 5.884 13 C -0.002 4.002 14 C -0.147 4.147 15 H 0.167 0.833 16 C -0.076 4.076 17 N -0.304 5.304 18 C -0.115 4.115 19 C 0.005 3.995 20 H 0.144 0.856 21 H 0.109 0.891 22 H 0.091 0.909 23 H 0.119 0.881 24 H 0.137 0.863 25 H 0.063 0.937 26 H 0.171 0.829 27 H 0.075 0.925 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.466 -10.060 -0.995 13.849 hybrid contribution 1.136 1.660 0.126 2.016 sum 10.602 -8.399 -0.869 13.554 Atomic orbital electron populations 1.70002 1.08891 1.32320 1.41641 1.26112 0.95426 1.05626 0.87494 0.85060 0.79423 0.74860 0.79517 1.16967 1.18161 1.18203 1.31128 1.07043 1.13297 1.66518 0.86631 0.99497 0.72549 0.72976 0.71340 1.93270 1.74411 1.88202 1.46616 1.93278 1.74612 1.88419 1.47421 1.60295 1.58854 1.52530 1.16720 1.22707 0.96550 0.89591 0.91304 1.24689 1.01756 0.94221 0.94061 0.83294 1.23210 0.95012 1.00611 0.88742 1.63008 1.57108 1.05103 1.05213 1.23121 0.99177 0.90316 0.98862 1.24049 0.94850 0.90440 0.90158 0.85618 0.89089 0.90933 0.88110 0.86284 0.93749 0.82917 0.92493 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.54 13.19 21.45 0.28 -55.25 15 2 C 0.07 3.78 5.46 84.65 0.46 4.24 15 3 Si 0.99 42.35 29.54 68.60 2.03 44.38 15 4 H -0.25 -9.73 7.11 99.48 0.71 -9.03 15 5 H -0.26 -10.32 7.11 99.48 0.71 -9.62 15 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 7 C -1.05 -60.06 9.75 67.73 0.66 -59.40 15 8 H 0.12 6.00 7.81 -2.91 -0.02 5.97 15 9 S 2.73 154.95 5.50 -56.49 -0.31 154.64 15 10 O -1.03 -64.32 15.88 -128.00 -2.03 -66.36 15 11 O -1.05 -66.32 17.98 -128.00 -2.30 -68.62 15 12 N -1.04 -42.84 3.62 -496.09 -1.79 -44.63 15 13 C 0.12 3.72 8.35 86.43 0.72 4.44 15 14 C -0.13 -2.82 5.22 -9.21 -0.05 -2.87 15 15 H 0.15 1.94 8.14 -2.39 -0.02 1.92 15 16 C 0.05 1.33 7.16 86.31 0.62 1.94 15 17 N -0.68 -18.10 7.54 -499.51 -3.77 -21.87 15 18 C 0.02 0.52 7.27 86.45 0.63 1.15 15 19 C 0.11 3.44 5.61 45.89 0.26 3.70 15 20 H 0.13 3.18 8.14 -2.38 -0.02 3.16 15 21 H 0.30 16.52 8.31 -92.71 -0.77 15.75 15 22 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.12 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.04 1.47 7.85 -2.39 -0.02 1.45 15 26 H 0.35 6.58 8.91 -89.69 -0.80 5.78 15 27 H 0.06 2.51 5.94 -2.39 -0.01 2.50 15 28 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -82.85 251.05 -4.22 -87.07 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.38 Total: 17.45 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 3.30 Total: -46.80 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.28 Total: -121.76 kcal Atomic # 8 Polarization: -130.64 SS G_CDS: -4.33 Total: -134.97 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 154.95 SS G_CDS: -0.31 Total: 154.64 kcal Total: -82.85 -4.22 -87.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239130853.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.400 kcal (2) G-P(sol) polarization free energy of solvation -82.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds