Wall clock time and date at job start Thu Apr 9 2020 12:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48501 * 109.46959 * 269.99865 * 3 2 1 5 5 H 1.48501 * 109.47239 * 30.00039 * 3 2 1 6 6 H 1.48493 * 109.47277 * 149.99935 * 3 2 1 7 7 C 1.38651 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00086 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99742 * 0.02562 * 7 2 1 10 10 C 1.35642 * 116.99520 * 185.06187 * 9 7 2 11 11 C 1.38725 * 120.15180 * 354.40157 * 10 9 7 12 12 C 1.38119 * 120.07135 * 180.02562 * 11 10 9 13 13 C 1.38477 * 120.37132 * 359.96694 * 12 11 10 14 14 C 1.37952 * 120.29207 * 0.02562 * 13 12 11 15 15 C 1.39498 * 119.92527 * 0.03028 * 14 13 12 16 16 C 1.47677 * 120.18205 * 179.97438 * 15 14 13 17 17 C 1.32998 * 125.95078 * 104.98274 * 16 15 14 18 18 C 1.51187 * 108.09595 * 179.97438 * 17 16 15 19 19 O 1.43993 * 105.79071 * 17.46790 * 18 17 16 20 20 C 1.44157 * 103.90319 * 332.18222 * 19 18 17 21 21 H 0.97006 * 120.00005 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.96630 * 0.02708 * 11 10 9 23 23 H 1.08004 * 119.81690 * 179.97438 * 12 11 10 24 24 H 1.07998 * 119.85358 * 179.74493 * 13 12 11 25 25 H 1.07999 * 120.03769 * 180.02562 * 14 13 12 26 26 H 1.08004 * 125.95720 * 359.97438 * 17 16 15 27 27 H 1.08999 * 110.19075 * 136.55088 * 18 17 16 28 28 H 1.08999 * 110.18893 * 258.31471 * 18 17 16 29 29 H 1.08999 * 110.33577 * 268.82722 * 20 19 18 30 30 H 1.09001 * 110.12239 * 146.92957 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3682 0.0005 10 6 2.0693 -3.5034 0.1077 11 6 3.4551 -3.4405 0.0943 12 6 4.2015 -4.5975 0.2030 13 6 3.5747 -5.8261 0.3266 14 6 2.1976 -5.9062 0.3418 15 6 1.4317 -4.7455 0.2317 16 6 -0.0429 -4.8248 0.2468 17 6 -0.8325 -4.4886 1.2628 18 6 -2.2652 -4.7281 0.8433 19 8 -2.1979 -5.5990 -0.3015 20 6 -0.9182 -5.2964 -0.8922 21 1 -0.4850 0.8401 0.0004 22 1 3.9508 -2.4857 -0.0013 23 1 5.2802 -4.5438 0.1916 24 1 4.1665 -6.7259 0.4069 25 1 1.7130 -6.8665 0.4389 26 1 -0.5072 -4.1103 2.2206 27 1 -2.8180 -5.2093 1.6501 28 1 -2.7405 -3.7853 0.5725 29 1 -1.0221 -4.5082 -1.6379 30 1 -0.4939 -6.1916 -1.3467 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239485336.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:18 Heat of formation + Delta-G solvation = -22.016340 kcal Electronic energy + Delta-G solvation = -15715.297806 eV Core-core repulsion = 13056.075011 eV Total energy + Delta-G solvation = -2659.222795 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.61128 -38.65420 -36.38244 -32.80689 -32.27475 -29.75947 -28.88601 -27.71787 -25.39932 -23.12030 -21.68883 -21.41315 -18.88272 -18.00808 -17.02940 -15.90072 -15.63644 -14.75013 -14.48699 -14.42401 -13.88319 -13.71870 -13.44104 -12.70580 -12.34884 -12.11819 -12.04542 -11.74305 -11.39434 -11.24170 -10.89413 -10.85425 -10.62726 -10.49597 -9.87231 -9.41393 -8.90247 -8.33171 -7.96675 -7.26131 -6.50690 -4.09647 1.96421 2.31887 2.60923 3.08899 3.09923 3.14464 3.91240 4.36735 4.47387 4.99185 5.06917 5.17735 5.50901 5.60608 5.63054 5.73955 5.80851 5.90024 5.96382 6.08864 6.18591 6.27095 6.63333 6.66236 6.82768 6.89451 7.02641 7.16026 7.30448 7.33745 7.37251 7.73987 7.93165 8.94490 9.63700 10.66473 Molecular weight = 232.09amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.009852 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.100356 B = 2841.316000 C = 4025.935931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.166 6.166 10 C 0.166 3.834 11 C -0.234 4.234 12 C -0.069 4.069 13 C -0.215 4.215 14 C -0.058 4.058 15 C -0.124 4.124 16 C -0.086 4.086 17 C -0.183 4.183 18 C 0.075 3.925 19 O -0.374 6.374 20 C 0.081 3.919 21 H 0.270 0.730 22 H 0.129 0.871 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.140 0.860 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -6.697 1.045 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.068 6.068 10 C 0.111 3.889 11 C -0.254 4.254 12 C -0.088 4.088 13 C -0.234 4.234 14 C -0.077 4.077 15 C -0.126 4.126 16 C -0.086 4.086 17 C -0.201 4.201 18 C -0.001 4.001 19 O -0.294 6.294 20 C 0.005 3.995 21 H 0.080 0.920 22 H 0.147 0.853 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.131 0.869 26 H 0.158 0.842 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.296 -6.620 0.939 6.810 hybrid contribution 0.788 1.139 0.082 1.387 sum 2.084 -5.481 1.022 5.952 Atomic orbital electron populations 1.70042 1.05914 1.27704 1.45494 1.25271 0.95830 0.98772 0.96405 0.85732 0.78973 0.80108 0.78765 1.19845 1.20213 1.19176 1.21343 0.91830 0.80827 1.53156 0.89074 1.83972 1.34116 1.11225 1.77519 1.19377 0.89998 0.87404 0.92097 1.21119 0.93498 0.99166 1.11569 1.20834 0.98559 0.92367 0.97016 1.20517 0.94124 0.97021 1.11775 1.20716 0.93363 0.95945 0.97635 1.17354 0.90041 0.91156 1.14020 1.21000 0.92628 1.00218 0.94744 1.24270 0.94166 1.01628 0.99996 1.22110 0.95420 0.94298 0.88289 1.89075 1.36262 1.61693 1.42328 1.22121 0.82057 1.00430 0.94891 0.91985 0.85347 0.87395 0.87404 0.86867 0.84203 0.89770 0.90997 0.90788 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.40 -10.80 9.49 30.88 0.29 -10.51 16 8 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 9 O -0.17 -4.60 9.21 0.43 0.00 -4.60 16 10 C 0.17 3.96 6.66 -38.68 -0.26 3.70 16 11 C -0.23 -5.02 9.16 -39.44 -0.36 -5.38 16 12 C -0.07 -1.26 10.03 -39.54 -0.40 -1.65 16 13 C -0.22 -3.69 10.03 -39.60 -0.40 -4.09 16 14 C -0.06 -1.06 9.78 -39.22 -0.38 -1.44 16 15 C -0.12 -2.63 5.74 -104.85 -0.60 -3.23 16 16 C -0.09 -1.74 5.22 -102.35 -0.53 -2.27 16 17 C -0.18 -3.53 11.00 -35.89 -0.39 -3.92 16 18 C 0.07 1.29 7.64 36.24 0.28 1.56 16 19 O -0.37 -6.89 11.80 -35.23 -0.42 -7.31 16 20 C 0.08 1.50 7.62 36.24 0.28 1.77 16 21 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.13 2.73 5.64 -52.48 -0.30 2.44 16 23 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 24 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 25 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.14 2.64 8.06 -52.48 -0.42 2.22 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 267.37 15.07 4.03 4.03 Total: -1.00 -29.81 267.37 -6.31 -36.13 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.09 Total: 4.81 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -2.58 Total: -24.43 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.76 Total: -23.77 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.41 Total: -11.90 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.81 -6.31 -36.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239485336.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.109 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds