Wall clock time and date at job start Thu Apr 9 2020 12:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48508 * 109.47091 * 95.01631 * 3 2 1 5 5 H 1.48498 * 109.47521 * 215.01624 * 3 2 1 6 6 H 1.48502 * 109.47185 * 335.02096 * 3 2 1 7 7 C 1.40026 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00387 * 10.20570 * 7 2 1 9 9 C 1.41286 * 120.00156 * 190.20172 * 7 2 1 10 10 C 1.40826 * 120.14288 * 187.97656 * 9 7 2 11 11 N 1.31903 * 119.98928 * 179.79444 * 10 9 7 12 12 C 1.32147 * 120.29867 * 0.46454 * 11 10 9 13 13 C 1.40150 * 120.29189 * 359.77064 * 12 11 10 14 14 C 1.48103 * 120.00064 * 179.97438 * 13 12 11 15 15 C 1.39625 * 122.86564 * 5.02166 * 14 13 12 16 16 C 1.33132 * 113.74736 * 179.97438 * 15 14 13 17 17 S 1.75728 * 109.77267 * 359.97438 * 16 15 14 18 18 C 1.34584 * 122.86686 * 184.72546 * 14 13 12 19 19 N 1.32618 * 120.00095 * 359.97438 * 13 12 11 20 20 H 0.96995 * 120.00012 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.00332 * 0.02562 * 10 9 7 22 22 H 1.07999 * 119.85318 * 179.74716 * 12 11 10 23 23 H 1.08006 * 123.13028 * 359.97438 * 15 14 13 24 24 H 1.07998 * 125.11343 * 180.02562 * 16 15 14 25 25 H 1.08000 * 124.74285 * 0.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5949 1.9853 1.3948 5 1 3.4819 1.4732 -0.8033 6 1 1.3898 2.6810 -0.5912 7 6 2.0076 -1.2126 0.0005 8 1 1.4805 -2.1407 -0.1648 9 6 3.4037 -1.2222 0.2173 10 6 4.1367 -2.4134 0.0531 11 7 5.4406 -2.4180 0.2523 12 6 6.0635 -1.3103 0.6148 13 6 5.3452 -0.1192 0.7864 14 6 6.0498 1.1183 1.1934 15 6 7.4381 1.1921 1.3231 16 6 7.8786 2.3912 1.6979 17 16 6.5198 3.4867 1.9016 18 6 5.4071 2.2693 1.4642 19 7 4.0347 -0.1001 0.5844 20 1 -0.4850 0.8400 -0.0004 21 1 3.6318 -3.3222 -0.2394 22 1 7.1307 -1.3232 0.7799 23 1 8.0937 0.3542 1.1367 24 1 8.9152 2.6517 1.8527 25 1 4.3366 2.4032 1.4135 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239508608.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:20 Heat of formation + Delta-G solvation = 60.202999 kcal Electronic energy + Delta-G solvation = -13345.892496 eV Core-core repulsion = 11029.447527 eV Total energy + Delta-G solvation = -2316.444970 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.037 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.56481 -37.42038 -34.16231 -32.71532 -31.02892 -28.85802 -26.54644 -24.59638 -22.09345 -21.84436 -18.88627 -18.09372 -17.26774 -16.30894 -15.61045 -15.02662 -14.74941 -13.77755 -13.34717 -13.11408 -12.64584 -12.40529 -12.31491 -11.77107 -11.56862 -11.23695 -11.11398 -10.76658 -10.53528 -9.92950 -9.58331 -9.23937 -8.77902 -8.56957 -7.60492 -7.54686 -7.13023 -4.93317 1.12368 1.87319 2.00473 2.23152 2.50227 3.21848 3.24875 3.38964 3.46497 4.16622 4.44730 4.95366 5.32816 5.41724 5.56994 5.69105 5.74509 5.97181 6.13380 6.26982 6.46408 6.56946 6.73818 6.85434 6.96667 7.43268 7.87131 8.16957 8.28478 8.84881 9.29563 9.76517 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.011296 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.567750 B = 2478.215813 C = 3487.559146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.079 3.921 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.256 1.256 6 H -0.326 1.326 7 C -0.387 4.387 8 H 0.104 0.896 9 C 0.197 3.803 10 C -0.039 4.039 11 N -0.420 5.420 12 C -0.103 4.103 13 C 0.184 3.816 14 C -0.056 4.056 15 C -0.107 4.107 16 C -0.236 4.236 17 S 0.134 5.866 18 C -0.222 4.222 19 N -0.536 5.536 20 H 0.293 0.707 21 H 0.143 0.857 22 H 0.135 0.865 23 H 0.147 0.853 24 H 0.164 0.836 25 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.329 6.649 2.508 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.146 4.146 3 Si 0.829 3.171 4 H -0.201 1.201 5 H -0.182 1.182 6 H -0.259 1.259 7 C -0.419 4.419 8 H 0.122 0.878 9 C 0.072 3.928 10 C -0.211 4.211 11 N -0.131 5.131 12 C -0.260 4.260 13 C 0.038 3.962 14 C -0.070 4.070 15 C -0.138 4.138 16 C -0.371 4.371 17 S 0.398 5.602 18 C -0.359 4.359 19 N -0.259 5.259 20 H 0.103 0.897 21 H 0.161 0.839 22 H 0.153 0.847 23 H 0.165 0.835 24 H 0.181 0.819 25 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.939 8.178 2.926 12.464 hybrid contribution 0.180 -0.927 -0.387 1.021 sum 9.118 7.251 2.539 11.923 Atomic orbital electron populations 1.69603 1.08619 1.31578 1.30795 1.26456 0.94988 1.03863 0.89261 0.84772 0.77168 0.75461 0.79653 1.20058 1.18188 1.25877 1.19557 0.89247 0.96189 1.36930 0.87810 1.19361 0.94590 0.88254 0.90611 1.23141 0.89951 0.98711 1.09314 1.67700 1.10456 1.28453 1.06503 1.22428 0.99369 0.89315 1.14871 1.19887 0.90540 0.91726 0.94038 1.17739 0.92346 0.93134 1.03775 1.20240 0.94267 0.98043 1.01216 1.25474 1.02464 0.97402 1.11806 1.82838 0.96208 1.14818 1.66298 1.25645 1.05630 0.97215 1.07402 1.67486 1.08057 1.28389 1.22006 0.89667 0.83937 0.84725 0.83538 0.81866 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.14 13.92 55.55 0.77 -19.36 15 2 C 0.08 2.04 5.52 -17.35 -0.10 1.95 15 3 Si 0.99 23.51 23.43 -169.99 -3.98 19.52 15 4 H -0.27 -6.35 5.83 56.52 0.33 -6.03 15 5 H -0.26 -6.36 6.42 56.52 0.36 -6.00 15 6 H -0.33 -7.44 7.11 56.52 0.40 -7.03 15 7 C -0.39 -10.17 9.71 -37.75 -0.37 -10.54 15 8 H 0.10 2.70 8.06 -52.49 -0.42 2.28 15 9 C 0.20 5.06 6.32 -84.84 -0.54 4.52 15 10 C -0.04 -0.94 10.97 -16.54 -0.18 -1.12 15 11 N -0.42 -9.88 10.47 -12.03 -0.13 -10.01 15 12 C -0.10 -2.26 10.69 -16.70 -0.18 -2.44 15 13 C 0.18 4.24 6.74 -82.76 -0.56 3.68 15 14 C -0.06 -1.10 5.79 -106.62 -0.62 -1.72 15 15 C -0.11 -1.67 9.60 -40.84 -0.39 -2.06 15 16 C -0.24 -3.12 11.20 28.95 0.32 -2.80 15 17 S 0.13 1.89 23.09 -107.50 -2.48 -0.59 15 18 C -0.22 -4.20 10.30 29.44 0.30 -3.90 15 19 N -0.54 -13.62 4.43 -7.52 -0.03 -13.65 15 20 H 0.29 6.83 8.29 -40.82 -0.34 6.49 15 21 H 0.14 3.07 8.06 -52.49 -0.42 2.65 15 22 H 0.14 2.52 6.59 -52.49 -0.35 2.17 15 23 H 0.15 1.99 6.78 -52.48 -0.36 1.63 15 24 H 0.16 1.59 8.06 -52.49 -0.42 1.17 15 25 H 0.17 3.56 4.13 -52.49 -0.22 3.34 15 LS Contribution 231.49 15.07 3.49 3.49 Total: -1.00 -28.27 231.49 -6.09 -34.37 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -1.43 Total: 0.67 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -2.30 Total: -14.44 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.61 Total: -43.02 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -3.98 Total: 19.52 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.48 Total: -0.59 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.27 -6.09 -34.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239508608.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.568 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds