Wall clock time and date at job start Thu Apr 9 2020 12:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48508 * 109.47091 * 95.01631 * 3 2 1 5 5 H 1.48498 * 109.47521 * 215.01624 * 3 2 1 6 6 H 1.48502 * 109.47185 * 335.02096 * 3 2 1 7 7 C 1.40026 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00387 * 10.20570 * 7 2 1 9 9 C 1.41286 * 120.00156 * 190.20172 * 7 2 1 10 10 C 1.40826 * 120.14288 * 187.97656 * 9 7 2 11 11 N 1.31903 * 119.98928 * 179.79444 * 10 9 7 12 12 C 1.32147 * 120.29867 * 0.46454 * 11 10 9 13 13 C 1.40150 * 120.29189 * 359.77064 * 12 11 10 14 14 C 1.48103 * 120.00064 * 179.97438 * 13 12 11 15 15 C 1.39625 * 122.86564 * 5.02166 * 14 13 12 16 16 C 1.33132 * 113.74736 * 179.97438 * 15 14 13 17 17 S 1.75728 * 109.77267 * 359.97438 * 16 15 14 18 18 C 1.34584 * 122.86686 * 184.72546 * 14 13 12 19 19 N 1.32618 * 120.00095 * 359.97438 * 13 12 11 20 20 H 0.96995 * 120.00012 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.00332 * 0.02562 * 10 9 7 22 22 H 1.07999 * 119.85318 * 179.74716 * 12 11 10 23 23 H 1.08006 * 123.13028 * 359.97438 * 15 14 13 24 24 H 1.07998 * 125.11343 * 180.02562 * 16 15 14 25 25 H 1.08000 * 124.74285 * 0.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5949 1.9853 1.3948 5 1 3.4819 1.4732 -0.8033 6 1 1.3898 2.6810 -0.5912 7 6 2.0076 -1.2126 0.0005 8 1 1.4805 -2.1407 -0.1648 9 6 3.4037 -1.2222 0.2173 10 6 4.1367 -2.4134 0.0531 11 7 5.4406 -2.4180 0.2523 12 6 6.0635 -1.3103 0.6148 13 6 5.3452 -0.1192 0.7864 14 6 6.0498 1.1183 1.1934 15 6 7.4381 1.1921 1.3231 16 6 7.8786 2.3912 1.6979 17 16 6.5198 3.4867 1.9016 18 6 5.4071 2.2693 1.4642 19 7 4.0347 -0.1001 0.5844 20 1 -0.4850 0.8400 -0.0004 21 1 3.6318 -3.3222 -0.2394 22 1 7.1307 -1.3232 0.7799 23 1 8.0937 0.3542 1.1367 24 1 8.9152 2.6517 1.8527 25 1 4.3366 2.4032 1.4135 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239508608.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:19 Heat of formation + Delta-G solvation = 42.090762 kcal Electronic energy + Delta-G solvation = -13346.677902 eV Core-core repulsion = 11029.447527 eV Total energy + Delta-G solvation = -2317.230375 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.34758 -38.79122 -36.07782 -34.55312 -32.77888 -30.21727 -28.39202 -26.25079 -23.92193 -23.29713 -20.38373 -19.76075 -18.79784 -17.99862 -17.37865 -16.85552 -16.20973 -15.54809 -15.06075 -14.57462 -14.06880 -14.03748 -13.81082 -13.36440 -13.23890 -13.04164 -12.91982 -12.61099 -11.81853 -11.76288 -11.48191 -11.11505 -10.42621 -9.79936 -9.47768 -9.06653 -9.01287 -6.89555 -0.31642 0.44737 0.66728 0.70213 1.03112 1.30601 1.40341 1.53018 1.86501 2.27944 2.54401 3.42721 3.52710 3.89956 4.02556 4.16020 4.40733 4.49106 4.55634 4.69091 4.91037 5.06144 5.11422 5.34103 5.47872 5.60312 5.87480 6.26751 6.35139 6.97389 7.42550 7.87478 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.011296 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.567750 B = 2478.215813 C = 3487.559146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.055 3.945 3 Si 1.038 2.962 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.314 1.314 7 C -0.420 4.420 8 H 0.092 0.908 9 C 0.186 3.814 10 C -0.056 4.056 11 N -0.426 5.426 12 C -0.090 4.090 13 C 0.168 3.832 14 C -0.080 4.080 15 C -0.126 4.126 16 C -0.209 4.209 17 S 0.202 5.798 18 C -0.262 4.262 19 N -0.555 5.555 20 H 0.302 0.698 21 H 0.158 0.842 22 H 0.175 0.825 23 H 0.168 0.832 24 H 0.209 0.791 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.464 8.180 3.236 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.167 4.167 3 Si 0.872 3.128 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.246 1.246 7 C -0.453 4.453 8 H 0.110 0.890 9 C 0.060 3.940 10 C -0.225 4.225 11 N -0.137 5.137 12 C -0.248 4.248 13 C 0.024 3.976 14 C -0.096 4.096 15 C -0.155 4.155 16 C -0.345 4.345 17 S 0.468 5.532 18 C -0.400 4.400 19 N -0.278 5.278 20 H 0.113 0.887 21 H 0.175 0.825 22 H 0.192 0.808 23 H 0.186 0.814 24 H 0.226 0.774 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.053 9.703 3.656 15.900 hybrid contribution -0.543 -1.326 -0.545 1.533 sum 11.510 8.377 3.111 14.572 Atomic orbital electron populations 1.69589 1.08970 1.32569 1.32203 1.26868 0.95456 1.05222 0.89154 0.84147 0.75510 0.73969 0.79129 1.20157 1.20473 1.24619 1.19562 0.89933 0.96144 1.39613 0.89004 1.19526 0.94676 0.89190 0.90609 1.23336 0.90365 0.98866 1.09907 1.67787 1.10077 1.29150 1.06687 1.23135 1.01099 0.88475 1.12140 1.20578 0.89952 0.93922 0.93186 1.17935 0.94257 0.91922 1.05454 1.20327 0.92360 0.99999 1.02808 1.26033 1.04210 0.95959 1.08255 1.82596 0.94476 1.12306 1.63861 1.25676 1.05778 0.99504 1.09040 1.67465 1.09638 1.28437 1.22270 0.88679 0.82481 0.80782 0.81437 0.77377 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.74 13.92 21.84 0.30 -42.43 15 2 C 0.05 2.92 5.52 85.29 0.47 3.39 15 3 Si 1.04 49.67 23.43 68.60 1.61 51.28 15 4 H -0.27 -12.95 5.83 99.48 0.58 -12.37 15 5 H -0.28 -14.09 6.42 99.48 0.64 -13.45 15 6 H -0.31 -14.10 7.11 99.48 0.71 -13.40 15 7 C -0.42 -22.98 9.71 23.45 0.23 -22.75 15 8 H 0.09 5.06 8.06 -2.91 -0.02 5.03 15 9 C 0.19 9.78 6.32 40.22 0.25 10.04 15 10 C -0.06 -2.69 10.97 85.32 0.94 -1.76 15 11 N -0.43 -19.56 10.47 -191.96 -2.01 -21.57 15 12 C -0.09 -3.81 10.69 85.11 0.91 -2.90 15 13 C 0.17 7.64 6.74 42.11 0.28 7.92 15 14 C -0.08 -3.01 5.79 -21.16 -0.12 -3.13 15 15 C -0.13 -3.42 9.60 21.46 0.21 -3.21 15 16 C -0.21 -4.40 11.20 66.67 0.75 -3.65 15 17 S 0.20 4.95 23.09 -56.49 -1.30 3.65 15 18 C -0.26 -9.58 10.30 66.98 0.69 -8.89 15 19 N -0.55 -28.51 4.43 -177.69 -0.79 -29.30 15 20 H 0.30 14.38 8.29 -92.71 -0.77 13.61 15 21 H 0.16 6.90 8.06 -2.91 -0.02 6.88 15 22 H 0.18 5.84 6.59 -2.91 -0.02 5.82 15 23 H 0.17 3.72 6.78 -2.91 -0.02 3.70 15 24 H 0.21 2.51 8.06 -2.91 -0.02 2.48 15 25 H 0.15 6.04 4.13 -2.91 -0.01 6.02 15 Total: -1.00 -62.44 231.49 3.45 -58.99 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.04 Total: 4.33 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 4.60 Total: -24.95 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -2.49 Total: -93.30 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 1.61 Total: 51.28 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.30 Total: 3.65 kcal Total: -62.44 3.45 -58.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239508608.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.085 kcal (2) G-P(sol) polarization free energy of solvation -62.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds