Wall clock time and date at job start Thu Apr 9 2020 12:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86805 * 119.99616 * 2 1 4 4 H 1.48505 * 109.46827 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47107 * 299.99723 * 3 2 1 6 6 H 1.48499 * 109.47337 * 60.00043 * 3 2 1 7 7 C 1.39904 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99711 * 162.34941 * 7 2 1 9 9 C 1.41318 * 119.99994 * 342.07234 * 7 2 1 10 10 C 1.40538 * 120.20337 * 335.38169 * 9 7 2 11 11 C 1.38648 * 119.65239 * 179.69516 * 10 9 7 12 12 C 1.48435 * 119.96064 * 180.29160 * 11 10 9 13 13 C 1.46699 * 127.11303 * 180.30459 * 12 11 10 14 14 C 1.34379 * 106.03186 * 180.02562 * 13 12 11 15 15 O 1.34157 * 108.98347 * 0.02562 * 14 13 12 16 16 C 1.34103 * 110.74441 * 359.72942 * 15 14 13 17 17 C 1.39814 * 120.07412 * 0.60735 * 11 10 9 18 18 C 1.38247 * 120.42401 * 359.66343 * 17 11 10 19 19 C 1.38064 * 120.34306 * 0.03068 * 18 17 11 20 20 F 1.35099 * 120.04452 * 180.02562 * 19 18 17 21 21 H 0.97000 * 119.99958 * 0.02562 * 1 2 3 22 22 H 1.07992 * 120.17280 * 359.97438 * 10 9 7 23 23 H 1.08004 * 126.98532 * 0.02562 * 13 12 11 24 24 H 1.07998 * 125.50673 * 179.97438 * 14 13 12 25 25 H 1.07999 * 125.76908 * 180.32441 * 16 15 14 26 26 H 1.08008 * 119.78614 * 179.69613 * 17 11 10 27 27 H 1.07996 * 119.82623 * 180.02562 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3465 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8838 2.3965 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0500 -1.2337 -0.2830 9 6 1.3531 -2.4056 0.3778 10 6 0.2272 -2.3593 1.2176 11 6 -0.4106 -3.5372 1.5754 12 6 -1.6042 -3.4958 2.4568 13 6 -2.3912 -4.6375 2.9355 14 6 -3.3687 -4.1205 3.6989 15 8 -3.2436 -2.7850 3.7228 16 6 -2.1909 -2.3934 2.9902 17 6 0.0733 -4.7645 1.1124 18 6 1.1840 -4.8141 0.2907 19 6 1.8287 -3.6514 -0.0815 20 9 2.9133 -3.7069 -0.8851 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1420 -1.4108 1.5786 23 1 -2.2197 -5.6816 2.7184 24 1 -4.1322 -4.6883 4.2099 25 1 -1.8656 -1.3735 2.8474 26 1 -0.4242 -5.6797 1.3980 27 1 1.5493 -5.7674 -0.0617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239688408.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:26 Heat of formation + Delta-G solvation = -24.274344 kcal Electronic energy + Delta-G solvation = -15183.397986 eV Core-core repulsion = 12400.616971 eV Total energy + Delta-G solvation = -2782.781015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.064 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.25309 -41.80509 -37.40679 -33.99154 -32.50968 -29.97961 -29.81623 -27.60862 -25.44271 -22.07126 -21.80207 -20.30841 -19.39480 -17.76613 -16.60282 -16.04002 -15.43227 -15.31913 -14.54463 -14.46046 -14.01879 -13.51428 -12.78669 -12.58597 -12.48469 -12.13122 -11.69463 -11.58642 -11.25380 -11.12598 -11.00795 -10.56197 -10.04796 -9.55513 -9.47494 -9.15229 -8.39620 -7.66191 -7.03179 -6.80612 -4.48703 1.99778 2.44832 2.68293 3.02476 3.03868 3.09516 3.51334 3.55167 3.85448 4.53687 5.12106 5.41483 5.44971 5.71709 5.88099 6.02772 6.06511 6.26152 6.43327 6.59445 6.80929 6.91334 7.04267 7.12062 7.43085 7.51873 7.59538 7.86694 7.87611 8.02478 8.43678 8.65572 8.74442 10.03737 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.009319 C = 0.006749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.684602 B = 3004.018206 C = 4147.565807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.086 3.914 10 C -0.132 4.132 11 C -0.019 4.019 12 C -0.116 4.116 13 C -0.206 4.206 14 C -0.054 4.054 15 O -0.190 6.190 16 C -0.039 4.039 17 C -0.203 4.203 18 C -0.122 4.122 19 C -0.029 4.029 20 F -0.163 7.163 21 H 0.283 0.717 22 H 0.128 0.872 23 H 0.146 0.854 24 H 0.196 0.804 25 H 0.205 0.795 26 H 0.099 0.901 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -2.523 4.928 6.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.481 4.481 8 H 0.102 0.898 9 C 0.083 3.917 10 C -0.151 4.151 11 C -0.020 4.020 12 C -0.117 4.117 13 C -0.226 4.226 14 C -0.121 4.121 15 O -0.087 6.087 16 C -0.106 4.106 17 C -0.222 4.222 18 C -0.141 4.141 19 C -0.049 4.049 20 F -0.142 7.142 21 H 0.094 0.906 22 H 0.146 0.854 23 H 0.164 0.836 24 H 0.213 0.787 25 H 0.222 0.778 26 H 0.117 0.883 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.557 -2.166 5.030 7.125 hybrid contribution 0.583 0.465 -0.372 0.833 sum -3.974 -1.701 4.658 6.355 Atomic orbital electron populations 1.69831 1.07600 1.29506 1.34579 1.25917 0.94783 1.01504 0.91982 0.86190 0.81114 0.80423 0.78697 1.18216 1.19802 1.19503 1.19545 0.98474 0.90894 1.39230 0.89772 1.17521 0.92439 0.91006 0.90763 1.21180 0.97981 0.96254 0.99734 1.17854 0.92973 0.94010 0.97152 1.20525 0.98100 0.91800 1.01259 1.22851 0.97592 0.99619 1.02492 1.23716 1.02477 0.81189 1.04686 1.83812 1.43282 1.23380 1.58238 1.24155 0.88901 0.99994 0.97506 1.20139 1.00048 0.95729 1.06306 1.20416 0.97337 0.95763 1.00584 1.17919 0.90872 0.94769 1.01333 1.91270 1.53414 1.97300 1.72246 0.90610 0.85434 0.83646 0.78736 0.77849 0.88331 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.52 10.97 55.55 0.61 -18.91 15 2 C 0.08 1.87 5.13 -17.34 -0.09 1.78 15 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 15 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 7 C -0.45 -12.00 8.78 -37.79 -0.33 -12.34 15 8 H 0.08 2.22 7.73 -52.49 -0.41 1.81 15 9 C 0.09 2.29 5.58 -106.80 -0.60 1.69 15 10 C -0.13 -3.31 8.22 -38.56 -0.32 -3.62 15 11 C -0.02 -0.44 5.87 -104.96 -0.62 -1.06 15 12 C -0.12 -2.32 6.24 -103.16 -0.64 -2.96 15 13 C -0.21 -3.43 10.53 -37.53 -0.40 -3.83 15 14 C -0.05 -0.78 12.05 29.37 0.35 -0.43 15 15 O -0.19 -3.15 10.55 6.64 0.07 -3.08 15 16 C -0.04 -0.72 11.52 29.86 0.34 -0.37 15 17 C -0.20 -4.47 9.62 -38.99 -0.38 -4.85 15 18 C -0.12 -2.79 9.99 -39.64 -0.40 -3.19 15 19 C -0.03 -0.74 7.31 -38.58 -0.28 -1.02 15 20 F -0.16 -4.15 16.70 2.25 0.04 -4.12 15 21 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 22 H 0.13 3.17 5.17 -52.49 -0.27 2.90 15 23 H 0.15 2.13 7.59 -52.48 -0.40 1.73 15 24 H 0.20 1.88 8.06 -52.49 -0.42 1.46 15 25 H 0.20 3.48 7.32 -52.49 -0.38 3.10 15 26 H 0.10 1.90 7.23 -52.48 -0.38 1.52 15 27 H 0.10 2.06 8.06 -52.49 -0.42 1.63 15 LS Contribution 249.42 15.07 3.76 3.76 Total: -1.00 -28.13 249.42 -5.72 -33.84 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -1.82 Total: 5.48 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: -3.34 Total: -30.19 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.61 Total: -18.91 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.13 -5.72 -33.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239688408.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.570 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds