Wall clock time and date at job start Thu Apr 9 2020 12:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 120.00347 * 2 1 4 4 H 1.48501 * 109.47077 * 270.00749 * 3 2 1 5 5 H 1.48504 * 109.46895 * 30.00220 * 3 2 1 6 6 H 1.48495 * 109.47529 * 150.00400 * 3 2 1 7 7 C 1.39978 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00002 * 164.23731 * 7 2 1 9 9 C 1.40837 * 119.99758 * 344.23494 * 7 2 1 10 10 C 1.40738 * 120.32083 * 333.30992 * 9 7 2 11 11 C 1.37580 * 119.84896 * 180.02562 * 10 9 7 12 12 F 1.35101 * 119.73496 * 179.97438 * 11 10 9 13 13 C 1.39237 * 120.52063 * 359.97438 * 11 10 9 14 14 C 1.37933 * 120.65854 * 359.74068 * 13 11 10 15 15 C 1.39234 * 120.13104 * 0.51722 * 14 13 11 16 16 C 1.47771 * 120.26403 * 179.76438 * 15 14 13 17 17 C 1.46858 * 127.16358 * 309.72814 * 16 15 14 18 18 C 1.34273 * 106.02788 * 179.73582 * 17 16 15 19 19 O 1.34208 * 109.12199 * 359.97438 * 18 17 16 20 20 C 1.33977 * 110.82270 * 0.02562 * 19 18 17 21 21 H 0.97004 * 119.99803 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.07730 * 359.97438 * 10 9 7 23 23 H 1.08000 * 119.66863 * 180.02562 * 13 11 10 24 24 H 1.08003 * 119.93274 * 180.28084 * 14 13 11 25 25 H 1.08003 * 126.98052 * 359.75269 * 17 16 15 26 26 H 1.08006 * 125.43985 * 180.02562 * 18 17 16 27 27 H 1.07996 * 125.82485 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4399 2.6526 0.7001 6 1 3.5400 1.4401 0.6999 7 6 2.0082 -1.2122 -0.0005 8 1 3.0577 -1.2297 -0.2546 9 6 1.3437 -2.4091 0.3303 10 6 0.2146 -2.3861 1.1701 11 6 -0.4268 -3.5612 1.4874 12 9 -1.5102 -3.5365 2.2942 13 6 0.0319 -4.7755 0.9837 14 6 1.1329 -4.8220 0.1542 15 6 1.8059 -3.6499 -0.1803 16 6 2.9890 -3.6969 -1.0646 17 6 4.1629 -4.5691 -0.9303 18 6 4.9710 -4.2639 -1.9582 19 8 4.4000 -3.2981 -2.6947 20 6 3.2152 -2.9438 -2.1792 21 1 -0.4850 0.8401 0.0004 22 1 -0.1471 -1.4483 1.5652 23 1 -0.4824 -5.6896 1.2414 24 1 1.4759 -5.7699 -0.2336 25 1 4.3399 -5.3063 -0.1611 26 1 5.9275 -4.7230 -2.1606 27 1 2.5519 -2.1908 -2.5785 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239690546.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:30 Heat of formation + Delta-G solvation = -24.313322 kcal Electronic energy + Delta-G solvation = -15346.428500 eV Core-core repulsion = 12563.645795 eV Total energy + Delta-G solvation = -2782.782705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.064 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.67658 -41.52605 -37.43691 -33.81932 -32.38726 -30.08068 -29.38513 -27.61662 -25.56514 -21.91298 -21.39174 -20.39940 -19.32968 -17.68469 -16.87279 -15.94126 -15.18990 -14.91056 -14.59352 -14.49547 -14.33517 -13.46707 -12.95773 -12.61471 -12.18447 -12.14655 -11.94594 -11.60172 -11.17609 -11.03547 -10.75647 -10.44338 -10.10772 -9.74704 -9.32807 -8.90959 -7.99029 -7.65045 -7.14638 -6.86006 -4.55143 2.32154 2.59163 2.70988 3.00021 3.03261 3.10304 3.48490 3.80180 3.81480 4.42928 5.32151 5.45181 5.63915 5.76722 5.99346 6.19987 6.29371 6.37964 6.58480 6.86639 6.90154 6.91363 7.10146 7.17468 7.43270 7.62086 7.74410 7.77960 7.95963 8.11425 8.42223 8.67429 8.73195 9.99851 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.013693 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.757585 B = 2044.302585 C = 3656.728277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.448 4.448 8 H 0.087 0.913 9 C 0.145 3.855 10 C -0.196 4.196 11 C 0.105 3.895 12 F -0.167 7.167 13 C -0.277 4.277 14 C -0.048 4.048 15 C -0.157 4.157 16 C -0.089 4.089 17 C -0.212 4.212 18 C -0.062 4.062 19 O -0.194 6.194 20 C -0.038 4.038 21 H 0.285 0.715 22 H 0.130 0.870 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.141 0.859 26 H 0.191 0.809 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -2.602 -2.129 6.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.476 4.476 8 H 0.105 0.895 9 C 0.142 3.858 10 C -0.216 4.216 11 C 0.086 3.914 12 F -0.147 7.147 13 C -0.297 4.297 14 C -0.066 4.066 15 C -0.158 4.158 16 C -0.090 4.090 17 C -0.231 4.231 18 C -0.129 4.129 19 O -0.091 6.091 20 C -0.104 4.104 21 H 0.096 0.904 22 H 0.148 0.852 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.158 0.842 26 H 0.208 0.792 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.876 -2.308 -2.361 5.889 hybrid contribution -0.014 0.622 0.405 0.742 sum 4.862 -1.686 -1.956 5.505 Atomic orbital electron populations 1.69809 1.07678 1.29808 1.33483 1.26009 0.94762 1.01604 0.92111 0.86288 0.80709 0.80258 0.79524 1.19178 1.19928 1.18248 1.19566 0.97739 0.90470 1.39835 0.89459 1.17291 0.89638 0.91491 0.87398 1.21215 1.00742 0.95887 1.03761 1.17769 0.85210 0.95297 0.93099 1.91334 1.53752 1.97621 1.71946 1.20186 1.03865 0.95237 1.10399 1.20358 0.94154 0.96220 0.95878 1.18014 0.98737 0.93588 1.05488 1.20133 0.95167 0.97606 0.96120 1.22925 0.95491 1.03838 1.00894 1.23570 0.99988 0.94669 0.94683 1.83763 1.30504 1.45966 1.48886 1.24348 0.86391 1.03051 0.96614 0.90410 0.85245 0.88137 0.88265 0.84153 0.79249 0.77890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.35 10.98 55.55 0.61 -18.74 15 2 C 0.07 1.77 5.16 -17.33 -0.09 1.68 15 3 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 15 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 7 C -0.45 -11.12 7.76 -37.95 -0.29 -11.41 15 8 H 0.09 2.13 6.72 -52.49 -0.35 1.78 15 9 C 0.14 3.70 5.57 -106.56 -0.59 3.10 15 10 C -0.20 -5.08 8.63 -38.88 -0.34 -5.41 15 11 C 0.11 2.59 7.28 -39.45 -0.29 2.30 15 12 F -0.17 -3.97 17.26 2.25 0.04 -3.93 15 13 C -0.28 -6.28 10.01 -39.32 -0.39 -6.68 15 14 C -0.05 -1.06 9.75 -39.32 -0.38 -1.44 15 15 C -0.16 -3.70 5.86 -104.22 -0.61 -4.31 15 16 C -0.09 -1.89 5.14 -103.17 -0.53 -2.42 15 17 C -0.21 -3.81 11.13 -37.49 -0.42 -4.22 15 18 C -0.06 -0.99 12.03 29.33 0.35 -0.63 15 19 O -0.19 -3.49 10.54 6.83 0.07 -3.42 15 20 C -0.04 -0.75 10.50 30.08 0.32 -0.43 15 21 H 0.28 6.40 8.30 -40.82 -0.34 6.07 15 22 H 0.13 3.47 6.25 -52.49 -0.33 3.14 15 23 H 0.10 2.04 8.06 -52.49 -0.42 1.62 15 24 H 0.10 1.94 8.06 -52.48 -0.42 1.52 15 25 H 0.14 2.25 8.06 -52.48 -0.42 1.83 15 26 H 0.19 2.10 8.06 -52.48 -0.42 1.68 15 27 H 0.20 3.90 7.93 -52.49 -0.42 3.48 15 LS Contribution 249.93 15.07 3.77 3.77 Total: -1.00 -26.89 249.93 -5.73 -32.62 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -1.92 Total: 6.73 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -3.27 Total: -29.87 kcal Atomic # 7 Polarization: -19.35 SS G_CDS: 0.61 Total: -18.74 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: 0.07 Total: -3.42 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.89 -5.73 -32.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239690546.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.308 kcal (2) G-P(sol) polarization free energy of solvation -26.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds