Wall clock time and date at job start Thu Apr 9 2020 12:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46931 * 85.18992 * 3 2 1 5 5 H 1.48496 * 109.46905 * 205.18563 * 3 2 1 6 6 H 1.48498 * 109.47355 * 325.19110 * 3 2 1 7 7 C 1.40023 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99851 * 197.50042 * 7 2 1 9 9 C 1.40859 * 120.00003 * 17.50242 * 7 2 1 10 10 C 1.40998 * 120.11280 * 25.28593 * 9 7 2 11 11 C 1.36110 * 119.92187 * 179.78014 * 10 9 7 12 12 C 1.40262 * 120.15713 * 0.47360 * 11 10 9 13 13 C 1.47307 * 119.87757 * 179.75950 * 12 11 10 14 14 C 1.32683 * 124.62506 * 244.70975 * 13 12 11 15 15 C 1.51113 * 110.74908 * 179.90400 * 14 13 12 16 16 C 1.54576 * 104.89342 * 343.74992 * 15 14 13 17 17 C 1.51117 * 124.62888 * 65.02101 * 13 12 11 18 18 C 1.40027 * 120.23554 * 359.77622 * 12 11 10 19 19 C 1.36469 * 120.07050 * 359.97438 * 18 12 11 20 20 F 1.35106 * 120.07799 * 179.97438 * 19 18 12 21 21 H 0.96995 * 120.00083 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.03766 * 0.02562 * 10 9 7 23 23 H 1.07996 * 119.91937 * 180.20619 * 11 10 9 24 24 H 1.08002 * 124.62180 * 0.02562 * 14 13 12 25 25 H 1.08993 * 110.49735 * 224.81247 * 15 14 13 26 26 H 1.09003 * 110.27013 * 102.57233 * 15 14 13 27 27 H 1.08998 * 110.98005 * 266.74164 * 16 15 14 28 28 H 1.08997 * 111.00987 * 142.96970 * 16 15 14 29 29 H 1.08997 * 110.36302 * 315.40791 * 17 13 12 30 30 H 1.08998 * 110.36174 * 77.61136 * 17 13 12 31 31 H 1.07998 * 119.96494 * 180.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3879 2.1051 1.3952 5 1 3.5868 1.4129 -0.5958 6 1 1.4941 2.6212 -0.7992 7 6 2.0082 -1.2127 0.0005 8 1 3.0507 -1.2342 0.2818 9 6 1.3528 -2.4044 -0.3658 10 6 0.2264 -2.3607 -1.2127 11 6 -0.4013 -3.5150 -1.5679 12 6 0.0638 -4.7472 -1.0853 13 6 -0.6234 -5.9923 -1.4694 14 6 -1.2636 -6.7913 -0.6254 15 6 -1.8542 -7.9763 -1.3536 16 6 -1.8346 -7.5754 -2.8463 17 6 -0.6898 -6.5374 -2.8772 18 6 1.1786 -4.7979 -0.2396 19 6 1.8182 -3.6467 0.1184 20 9 2.8936 -3.6954 0.9348 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1355 -1.4127 -1.5824 23 1 -1.2620 -3.4818 -2.2193 24 1 -1.3522 -6.6172 0.4368 25 1 -2.8769 -8.1567 -1.0226 26 1 -1.2416 -8.8631 -1.1909 27 1 -2.7810 -7.1219 -3.1410 28 1 -1.6015 -8.4325 -3.4781 29 1 -0.9206 -5.7390 -3.5825 30 1 0.2522 -7.0168 -3.1431 31 1 1.5333 -5.7490 0.1290 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239786789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:36 Heat of formation + Delta-G solvation = -30.665901 kcal Electronic energy + Delta-G solvation = -15322.632362 eV Core-core repulsion = 12675.407283 eV Total energy + Delta-G solvation = -2647.225079 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.23595 -38.43571 -36.84207 -33.88121 -30.60862 -29.22368 -28.13402 -27.74402 -24.76811 -21.47985 -20.95690 -20.23772 -17.84080 -17.47801 -16.06783 -15.48551 -15.11961 -14.51355 -14.37979 -14.01487 -13.91636 -12.66197 -12.51295 -12.28659 -11.98352 -11.83986 -11.54765 -11.40517 -11.18139 -10.96640 -10.82360 -10.81864 -10.69146 -10.36744 -9.87513 -9.60215 -9.28607 -8.21917 -7.55160 -7.32244 -6.92290 -4.47032 2.35402 2.80433 2.88591 3.00223 3.05386 3.14442 3.82557 4.42387 4.99379 5.07981 5.24159 5.43986 5.65010 5.79523 5.96803 5.98604 6.04423 6.15070 6.19774 6.21562 6.30481 6.41630 6.56069 6.87652 6.99035 7.07501 7.12352 7.44476 7.48169 7.63312 7.91517 7.95124 8.03518 8.44936 8.62191 8.77666 9.99155 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.043577 B = 0.006293 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.390828 B = 4448.149371 C = 4842.206488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.258 1.258 6 H -0.273 1.273 7 C -0.446 4.446 8 H 0.084 0.916 9 C 0.091 3.909 10 C -0.153 4.153 11 C -0.084 4.084 12 C -0.169 4.169 13 C -0.043 4.043 14 C -0.203 4.203 15 C -0.090 4.090 16 C -0.125 4.125 17 C -0.093 4.093 18 C -0.099 4.099 19 C -0.033 4.033 20 F -0.165 7.165 21 H 0.285 0.715 22 H 0.125 0.875 23 H 0.094 0.906 24 H 0.119 0.881 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -6.312 -3.820 7.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.182 1.182 6 H -0.198 1.198 7 C -0.475 4.475 8 H 0.102 0.898 9 C 0.088 3.912 10 C -0.172 4.172 11 C -0.103 4.103 12 C -0.171 4.171 13 C -0.043 4.043 14 C -0.221 4.221 15 C -0.127 4.127 16 C -0.162 4.162 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.053 4.053 20 F -0.144 7.144 21 H 0.096 0.904 22 H 0.143 0.857 23 H 0.112 0.888 24 H 0.137 0.863 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.871 -6.145 -3.781 7.765 hybrid contribution 0.478 0.753 0.303 0.942 sum -2.393 -5.392 -3.478 6.848 Atomic orbital electron populations 1.69808 1.07748 1.29809 1.33178 1.25991 0.94789 1.01675 0.91977 0.86196 0.80788 0.79962 0.79317 1.19296 1.18156 1.19786 1.19548 0.98410 0.91054 1.38445 0.89756 1.17689 0.92368 0.90895 0.90259 1.20815 0.98606 0.97332 1.00463 1.20480 0.98503 0.92007 0.99288 1.17607 1.00427 0.91191 1.07862 1.20621 0.95837 0.93488 0.94333 1.23545 1.02610 0.96907 0.99001 1.21187 1.00050 0.97128 0.94372 1.22410 0.98848 0.98538 0.96424 1.21304 0.98234 0.97695 0.95774 1.20266 0.96505 0.95728 0.99294 1.17418 0.91650 0.94849 1.01399 1.91275 1.54205 1.97332 1.71597 0.90410 0.85732 0.88807 0.86308 0.91992 0.91694 0.91496 0.91612 0.91357 0.91062 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.59 10.97 55.55 0.61 -18.98 16 2 C 0.08 1.85 5.13 -17.32 -0.09 1.77 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.90 8.75 -37.92 -0.33 -12.23 16 8 H 0.08 2.22 7.74 -52.49 -0.41 1.81 16 9 C 0.09 2.45 5.57 -106.73 -0.59 1.86 16 10 C -0.15 -3.88 8.62 -39.30 -0.34 -4.21 16 11 C -0.08 -1.94 9.71 -39.59 -0.38 -2.32 16 12 C -0.17 -3.76 5.66 -104.78 -0.59 -4.36 16 13 C -0.04 -0.80 5.49 -102.62 -0.56 -1.36 16 14 C -0.20 -3.43 10.70 -36.00 -0.39 -3.81 16 15 C -0.09 -1.21 6.80 -26.85 -0.18 -1.39 16 16 C -0.12 -1.59 7.16 -25.08 -0.18 -1.77 16 17 C -0.09 -1.44 6.74 -26.86 -0.18 -1.62 16 18 C -0.10 -2.32 9.68 -39.55 -0.38 -2.70 16 19 C -0.03 -0.86 7.25 -39.09 -0.28 -1.14 16 20 F -0.16 -4.25 16.70 2.25 0.04 -4.21 16 21 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 22 H 0.12 3.20 6.19 -52.49 -0.32 2.87 16 23 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 24 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 271.09 15.07 4.09 4.09 Total: -1.00 -26.97 271.09 -8.46 -35.43 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -3.67 Total: 3.76 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -4.49 Total: -33.29 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.61 Total: -18.98 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.97 -8.46 -35.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239786789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.761 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds