Wall clock time and date at job start Thu Apr 9 2020 12:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46931 * 85.18992 * 3 2 1 5 5 H 1.48496 * 109.46905 * 205.18563 * 3 2 1 6 6 H 1.48498 * 109.47355 * 325.19110 * 3 2 1 7 7 C 1.40023 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99851 * 197.50042 * 7 2 1 9 9 C 1.40859 * 120.00003 * 17.50242 * 7 2 1 10 10 C 1.40998 * 120.11280 * 25.28593 * 9 7 2 11 11 C 1.36110 * 119.92187 * 179.78014 * 10 9 7 12 12 C 1.40262 * 120.15713 * 0.47360 * 11 10 9 13 13 C 1.47307 * 119.87757 * 179.75950 * 12 11 10 14 14 C 1.32683 * 124.62506 * 244.70975 * 13 12 11 15 15 C 1.51113 * 110.74908 * 179.90400 * 14 13 12 16 16 C 1.54576 * 104.89342 * 343.74992 * 15 14 13 17 17 C 1.51117 * 124.62888 * 65.02101 * 13 12 11 18 18 C 1.40027 * 120.23554 * 359.77622 * 12 11 10 19 19 C 1.36469 * 120.07050 * 359.97438 * 18 12 11 20 20 F 1.35106 * 120.07799 * 179.97438 * 19 18 12 21 21 H 0.96995 * 120.00083 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.03766 * 0.02562 * 10 9 7 23 23 H 1.07996 * 119.91937 * 180.20619 * 11 10 9 24 24 H 1.08002 * 124.62180 * 0.02562 * 14 13 12 25 25 H 1.08993 * 110.49735 * 224.81247 * 15 14 13 26 26 H 1.09003 * 110.27013 * 102.57233 * 15 14 13 27 27 H 1.08998 * 110.98005 * 266.74164 * 16 15 14 28 28 H 1.08997 * 111.00987 * 142.96970 * 16 15 14 29 29 H 1.08997 * 110.36302 * 315.40791 * 17 13 12 30 30 H 1.08998 * 110.36174 * 77.61136 * 17 13 12 31 31 H 1.07998 * 119.96494 * 180.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3879 2.1051 1.3952 5 1 3.5868 1.4129 -0.5958 6 1 1.4941 2.6212 -0.7992 7 6 2.0082 -1.2127 0.0005 8 1 3.0507 -1.2342 0.2818 9 6 1.3528 -2.4044 -0.3658 10 6 0.2264 -2.3607 -1.2127 11 6 -0.4013 -3.5150 -1.5679 12 6 0.0638 -4.7472 -1.0853 13 6 -0.6234 -5.9923 -1.4694 14 6 -1.2636 -6.7913 -0.6254 15 6 -1.8542 -7.9763 -1.3536 16 6 -1.8346 -7.5754 -2.8463 17 6 -0.6898 -6.5374 -2.8772 18 6 1.1786 -4.7979 -0.2396 19 6 1.8182 -3.6467 0.1184 20 9 2.8936 -3.6954 0.9348 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1355 -1.4127 -1.5824 23 1 -1.2620 -3.4818 -2.2193 24 1 -1.3522 -6.6172 0.4368 25 1 -2.8769 -8.1567 -1.0226 26 1 -1.2416 -8.8631 -1.1909 27 1 -2.7810 -7.1219 -3.1410 28 1 -1.6015 -8.4325 -3.4781 29 1 -0.9206 -5.7390 -3.5825 30 1 0.2522 -7.0168 -3.1431 31 1 1.5333 -5.7490 0.1290 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239786789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:35 Heat of formation + Delta-G solvation = -42.506701 kcal Electronic energy + Delta-G solvation = -15323.145817 eV Core-core repulsion = 12675.407283 eV Total energy + Delta-G solvation = -2647.738535 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.25729 -39.94282 -38.46236 -35.71664 -32.33084 -31.12399 -29.58581 -29.04202 -26.50764 -23.31740 -22.71754 -21.45425 -19.43788 -19.34291 -17.69596 -17.24086 -16.57991 -16.21733 -16.03554 -15.96584 -15.55307 -14.51112 -14.11518 -13.74570 -13.52118 -13.42197 -13.18531 -13.02709 -12.71061 -12.43744 -12.32985 -11.99798 -11.92600 -11.87825 -11.72520 -11.43441 -11.10872 -9.70876 -9.45237 -9.12514 -8.76314 -6.44388 0.61603 0.88685 1.33222 1.36431 1.50081 1.55192 2.16125 2.57426 3.44689 3.78028 3.95078 4.05411 4.24898 4.27612 4.40546 4.53630 4.64703 4.89379 4.93155 4.98039 5.06652 5.08094 5.12570 5.20254 5.30077 5.43732 5.52815 5.57635 5.89579 5.93674 6.00548 6.09151 6.16981 6.49548 6.69039 6.83164 8.18251 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.043577 B = 0.006293 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.390828 B = 4448.149371 C = 4842.206488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.488 4.488 8 H 0.072 0.928 9 C 0.060 3.940 10 C -0.166 4.166 11 C -0.087 4.087 12 C -0.153 4.153 13 C -0.082 4.082 14 C -0.187 4.187 15 C -0.088 4.088 16 C -0.116 4.116 17 C -0.091 4.091 18 C -0.105 4.105 19 C -0.063 4.063 20 F -0.171 7.171 21 H 0.296 0.704 22 H 0.116 0.884 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -7.471 -4.716 9.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.180 1.180 7 C -0.516 4.516 8 H 0.091 0.909 9 C 0.057 3.943 10 C -0.185 4.185 11 C -0.106 4.106 12 C -0.155 4.155 13 C -0.082 4.082 14 C -0.205 4.205 15 C -0.125 4.125 16 C -0.153 4.153 17 C -0.128 4.128 18 C -0.124 4.124 19 C -0.083 4.083 20 F -0.151 7.151 21 H 0.107 0.893 22 H 0.134 0.866 23 H 0.136 0.864 24 H 0.129 0.871 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.067 -7.327 -4.679 9.598 hybrid contribution 0.750 0.946 0.611 1.353 sum -3.317 -6.381 -4.068 8.262 Atomic orbital electron populations 1.69820 1.08996 1.31393 1.33244 1.26818 0.95597 1.04583 0.90827 0.85108 0.79149 0.75347 0.79665 1.18596 1.18398 1.18009 1.19697 0.98276 0.92557 1.41064 0.90947 1.18033 0.93451 0.91591 0.91256 1.20825 0.98870 0.97915 1.00889 1.20770 0.98853 0.91680 0.99265 1.18038 0.99174 0.92763 1.05498 1.20706 0.97696 0.92915 0.96894 1.23891 1.00550 0.97316 0.98704 1.21265 1.01132 0.95844 0.94288 1.22424 0.97975 0.98540 0.96347 1.21317 0.99778 0.98397 0.93344 1.20532 0.96718 0.95618 0.99504 1.17748 0.92359 0.95724 1.02461 1.91236 1.54570 1.97394 1.71880 0.89313 0.86619 0.86439 0.87107 0.90065 0.89931 0.90712 0.88951 0.91635 0.90683 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.41 10.97 21.84 0.24 -41.17 16 2 C 0.04 1.95 5.13 85.28 0.44 2.39 16 3 Si 0.99 37.79 29.59 68.60 2.03 39.83 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.49 -27.19 8.75 23.34 0.20 -26.98 16 8 H 0.07 4.04 7.74 -2.91 -0.02 4.01 16 9 C 0.06 3.35 5.57 -21.23 -0.12 3.24 16 10 C -0.17 -8.65 8.62 22.45 0.19 -8.46 16 11 C -0.09 -4.03 9.71 22.27 0.22 -3.81 16 12 C -0.15 -6.75 5.66 -19.97 -0.11 -6.87 16 13 C -0.08 -2.90 5.49 -18.51 -0.10 -3.00 16 14 C -0.19 -5.82 10.70 24.65 0.26 -5.56 16 15 C -0.09 -1.99 6.80 30.52 0.21 -1.78 16 16 C -0.12 -2.44 7.16 31.66 0.23 -2.21 16 17 C -0.09 -2.56 6.74 30.51 0.21 -2.36 16 18 C -0.10 -4.97 9.68 22.29 0.22 -4.75 16 19 C -0.06 -3.38 7.25 22.59 0.16 -3.22 16 20 F -0.17 -9.21 16.70 44.97 0.75 -8.45 16 21 H 0.30 13.39 8.30 -92.71 -0.77 12.62 16 22 H 0.12 6.15 6.19 -2.91 -0.02 6.13 16 23 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 24 H 0.11 3.59 8.06 -2.91 -0.02 3.56 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -59.82 271.09 6.15 -53.67 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 1.12 Total: 19.50 kcal Atomic # 6 Polarization: -65.37 SS G_CDS: 2.00 Total: -63.37 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.24 Total: -41.17 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 0.75 Total: -8.45 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.83 kcal Total: -59.82 6.15 -53.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239786789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.162 kcal (2) G-P(sol) polarization free energy of solvation -59.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds