Wall clock time and date at job start Thu Apr 9 2020 12:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86806 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47313 * 300.00385 * 3 2 1 6 6 H 1.48503 * 109.47053 * 60.00418 * 3 2 1 7 7 C 1.39928 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00149 * 197.81324 * 7 2 1 9 9 C 1.41321 * 119.99841 * 17.80792 * 7 2 1 10 10 C 1.40790 * 120.19727 * 24.67203 * 9 7 2 11 11 C 1.37640 * 120.06238 * 179.97438 * 10 9 7 12 12 C 1.38460 * 120.47781 * 0.02562 * 11 10 9 13 13 C 1.39742 * 120.40052 * 359.67400 * 12 11 10 14 14 C 1.47802 * 120.03971 * 180.32383 * 13 12 11 15 15 C 1.32172 * 124.58316 * 104.97949 * 14 13 12 16 16 C 1.51109 * 110.83309 * 179.84470 * 15 14 13 17 17 C 1.54590 * 104.87399 * 343.83743 * 16 15 14 18 18 C 1.51111 * 124.58499 * 285.27840 * 14 13 12 19 19 C 1.39305 * 119.92017 * 0.60254 * 13 12 11 20 20 F 1.35108 * 120.23550 * 179.69467 * 19 13 12 21 21 H 0.96996 * 120.00302 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.97089 * 359.95913 * 10 9 7 23 23 H 1.07997 * 119.76417 * 180.02562 * 11 10 9 24 24 H 1.08001 * 119.79875 * 179.97438 * 12 11 10 25 25 H 1.07995 * 124.58301 * 0.02562 * 15 14 13 26 26 H 1.09004 * 110.52008 * 224.89525 * 16 15 14 27 27 H 1.08994 * 110.16028 * 102.59730 * 16 15 14 28 28 H 1.09007 * 110.99496 * 266.64024 * 17 16 15 29 29 H 1.09004 * 110.99341 * 142.82020 * 17 16 15 30 30 H 1.09001 * 110.36975 * 315.40177 * 18 14 13 31 31 H 1.08994 * 110.36841 * 77.73316 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3466 -0.0006 5 1 1.8836 2.3966 -1.2124 6 1 1.8837 2.3965 1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0494 -1.2342 0.2856 9 6 1.3525 -2.4062 -0.3754 10 6 0.2237 -2.3607 -1.2156 11 6 -0.4125 -3.5257 -1.5794 12 6 0.0487 -4.7493 -1.1242 13 6 1.1711 -4.8179 -0.2945 14 6 1.6608 -6.1289 0.1809 15 6 2.7368 -6.7407 -0.2826 16 6 2.9522 -8.0586 0.4248 17 6 2.0692 -7.9782 1.6911 18 6 0.9955 -6.9539 1.2580 19 6 1.8243 -3.6487 0.0887 20 9 2.9063 -3.7071 0.8957 21 1 -0.4850 0.8400 0.0004 22 1 -0.1435 -1.4106 -1.5749 23 1 -1.2777 -3.4852 -2.2244 24 1 -0.4591 -5.6567 -1.4162 25 1 3.3772 -6.3502 -1.0595 26 1 4.0002 -8.1777 0.7000 27 1 2.6298 -8.8832 -0.2109 28 1 2.6404 -7.6087 2.5428 29 1 1.6187 -8.9452 1.9150 30 1 0.7127 -6.3218 2.0997 31 1 0.1214 -7.4670 0.8572 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239787089.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:37 Heat of formation + Delta-G solvation = -41.521621 kcal Electronic energy + Delta-G solvation = -15564.094457 eV Core-core repulsion = 12916.398638 eV Total energy + Delta-G solvation = -2647.695818 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.20250 -39.84670 -38.54782 -35.67409 -32.32910 -31.44530 -29.32254 -28.27432 -27.25459 -23.29874 -22.62074 -21.58111 -19.90516 -18.54631 -17.94701 -17.20061 -16.80869 -16.35903 -16.18504 -15.90303 -15.21111 -14.65826 -13.86681 -13.68841 -13.55666 -13.49182 -13.07357 -13.01742 -12.74350 -12.55665 -12.37662 -12.14896 -11.96959 -11.96231 -11.70051 -11.39218 -11.11552 -9.67464 -9.42512 -9.12465 -8.73304 -6.46133 0.70841 0.79310 1.28128 1.34800 1.45543 1.50911 2.16974 2.59080 3.43847 3.70739 3.86032 3.98578 4.21210 4.24870 4.47262 4.50375 4.71359 4.81662 4.87767 4.91467 4.97957 5.04600 5.15375 5.19508 5.25063 5.38768 5.52304 5.69826 5.72725 5.89450 5.98556 6.04535 6.15419 6.52316 6.73796 6.84671 8.22813 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.040786 B = 0.007053 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.350937 B = 3968.927663 C = 4377.194200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.040 3.960 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.255 1.255 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.067 0.933 9 C 0.056 3.944 10 C -0.168 4.168 11 C -0.107 4.107 12 C -0.200 4.200 13 C -0.053 4.053 14 C -0.108 4.108 15 C -0.169 4.169 16 C -0.087 4.087 17 C -0.116 4.116 18 C -0.087 4.087 19 C -0.050 4.050 20 F -0.169 7.169 21 H 0.294 0.706 22 H 0.115 0.885 23 H 0.129 0.871 24 H 0.129 0.871 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 -9.005 -0.143 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.176 4.176 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.179 1.179 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.085 0.915 9 C 0.053 3.947 10 C -0.187 4.187 11 C -0.126 4.126 12 C -0.219 4.219 13 C -0.054 4.054 14 C -0.108 4.108 15 C -0.187 4.187 16 C -0.123 4.123 17 C -0.153 4.153 18 C -0.124 4.124 19 C -0.070 4.070 20 F -0.148 7.148 21 H 0.105 0.895 22 H 0.133 0.867 23 H 0.147 0.853 24 H 0.147 0.853 25 H 0.129 0.871 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.821 -8.865 -0.087 8.903 hybrid contribution 0.466 1.187 0.127 1.281 sum 1.286 -7.678 0.040 7.785 Atomic orbital electron populations 1.69838 1.08842 1.31059 1.34436 1.26734 0.95598 1.04392 0.90913 0.85114 0.79082 0.75759 0.79507 1.18791 1.17907 1.18593 1.19678 0.98157 0.92613 1.42114 0.91459 1.17947 0.93704 0.91420 0.91634 1.21227 0.98713 0.98080 1.00719 1.21015 0.99463 0.92243 0.99834 1.20665 0.98777 0.97545 1.04956 1.18551 0.96838 0.90615 0.99419 1.20845 0.97807 0.92878 0.99316 1.23772 0.96631 0.97750 1.00536 1.21298 1.00960 0.94269 0.95818 1.22450 0.96141 0.99348 0.97387 1.21285 0.99271 0.96222 0.95611 1.18260 0.91702 0.94750 1.02328 1.91219 1.53947 1.97299 1.72332 0.89534 0.86692 0.85346 0.85294 0.87146 0.90020 0.88775 0.91513 0.88046 0.92886 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.52 10.96 21.82 0.24 -42.28 16 2 C 0.04 2.04 5.14 85.25 0.44 2.47 16 3 Si 0.99 38.86 29.60 68.60 2.03 40.89 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.50 -28.35 8.78 23.44 0.21 -28.14 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.06 3.18 5.57 -21.28 -0.12 3.06 16 10 C -0.17 -8.85 8.69 22.75 0.20 -8.65 16 11 C -0.11 -4.86 10.00 22.18 0.22 -4.64 16 12 C -0.20 -8.72 9.78 22.69 0.22 -8.49 16 13 C -0.05 -2.50 5.64 -20.13 -0.11 -2.61 16 14 C -0.11 -4.18 5.15 -18.21 -0.09 -4.28 16 15 C -0.17 -5.73 10.68 24.81 0.26 -5.47 16 16 C -0.09 -2.10 6.80 30.52 0.21 -1.89 16 17 C -0.12 -2.75 7.17 31.67 0.23 -2.52 16 18 C -0.09 -2.70 6.74 30.52 0.21 -2.49 16 19 C -0.05 -2.74 7.29 23.15 0.17 -2.57 16 20 F -0.17 -9.28 16.27 44.97 0.73 -8.55 16 21 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 22 H 0.12 6.18 6.16 -2.91 -0.02 6.16 16 23 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 24 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 25 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 26 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -62.55 270.78 6.16 -56.39 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 1.12 Total: 19.77 kcal Atomic # 6 Polarization: -68.25 SS G_CDS: 2.03 Total: -66.22 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.24 Total: -42.28 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 0.73 Total: -8.55 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -62.55 6.16 -56.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239787089.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.871 kcal (2) G-P(sol) polarization free energy of solvation -62.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds