Wall clock time and date at job start Thu Apr 9 2020 12:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86801 * 120.00334 * 2 1 4 4 H 1.48500 * 109.46923 * 269.99977 * 3 2 1 5 5 H 1.48499 * 109.46967 * 29.99724 * 3 2 1 6 6 H 1.48492 * 109.47232 * 150.00095 * 3 2 1 7 7 C 1.39930 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00017 * 162.72718 * 7 2 1 9 9 C 1.41430 * 119.99991 * 342.72654 * 7 2 1 10 10 C 1.40764 * 120.16578 * 154.82710 * 9 7 2 11 11 C 1.37911 * 120.01016 * 179.97438 * 10 9 7 12 12 F 1.35097 * 119.82589 * 179.97438 * 11 10 9 13 13 C 1.38624 * 120.35020 * 0.02562 * 11 10 9 14 14 C 1.39841 * 120.33331 * 359.97438 * 13 11 10 15 15 C 1.47836 * 120.00895 * 180.02562 * 14 13 11 16 16 C 1.32151 * 124.58048 * 114.70071 * 15 14 13 17 17 C 1.51110 * 110.83295 * 179.90056 * 16 15 14 18 18 C 1.54590 * 104.86842 * 343.78120 * 17 16 15 19 19 C 1.51107 * 124.58365 * 294.99312 * 15 14 13 20 20 C 1.38978 * 119.98085 * 0.02562 * 14 13 11 21 21 H 0.97003 * 119.99398 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.99325 * 0.25188 * 10 9 7 23 23 H 1.08007 * 119.83425 * 179.97438 * 13 11 10 24 24 H 1.08003 * 124.58305 * 359.97438 * 16 15 14 25 25 H 1.09003 * 110.49768 * 224.84977 * 17 16 15 26 26 H 1.08994 * 110.18848 * 102.55682 * 17 16 15 27 27 H 1.08998 * 110.99803 * 266.66723 * 18 17 16 28 28 H 1.08999 * 111.02236 * 142.85543 * 18 17 16 29 29 H 1.09001 * 110.37303 * 315.36859 * 19 15 14 30 30 H 1.09010 * 110.36520 * 77.69666 * 19 15 14 31 31 H 1.07994 * 120.17482 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0514 -1.2329 -0.2783 9 6 1.3486 -2.4092 0.3626 10 6 1.8181 -3.6477 -0.1139 11 6 1.1730 -4.8134 0.2427 12 9 1.6264 -6.0000 -0.2172 13 6 0.0611 -4.7738 1.0696 14 6 -0.4176 -3.5514 1.5513 15 6 -1.6036 -3.5176 2.4333 16 6 -1.5882 -3.1297 3.6965 17 6 -2.9699 -3.2162 4.3022 18 6 -3.9267 -3.3282 3.0931 19 6 -2.9962 -3.9277 2.0140 20 6 0.2218 -2.3683 1.2007 21 1 -0.4849 0.8401 0.0004 22 1 2.6862 -3.6856 -0.7552 23 1 -0.4380 -5.6917 1.3433 24 1 -0.7073 -2.7950 4.2242 25 1 -3.1907 -2.3180 4.8789 26 1 -3.0495 -4.1018 4.9324 27 1 -4.2922 -2.3465 2.7921 28 1 -4.7558 -4.0012 3.3117 29 1 -3.2351 -3.5135 1.0344 30 1 -3.0833 -5.0142 1.9989 31 1 -0.1455 -1.4225 1.5706 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239788969.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:40 Heat of formation + Delta-G solvation = -31.999532 kcal Electronic energy + Delta-G solvation = -15413.532252 eV Core-core repulsion = 12766.249342 eV Total energy + Delta-G solvation = -2647.282910 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.75020 -38.46004 -36.81484 -33.70074 -30.86428 -29.26453 -27.97381 -26.87176 -25.45377 -21.38576 -21.11885 -20.28742 -18.19572 -17.00338 -15.75512 -15.26519 -15.13997 -14.71968 -14.63341 -14.41000 -14.25097 -12.98609 -12.41684 -12.27210 -11.83023 -11.74671 -11.54761 -11.19527 -11.18796 -11.04280 -10.81786 -10.76668 -10.61934 -10.31460 -10.13508 -9.59445 -9.24134 -8.27146 -7.52145 -7.24493 -6.88390 -4.52147 2.38502 2.69574 2.92644 3.01721 3.05189 3.13171 3.84615 4.42352 5.01007 5.07737 5.29264 5.45487 5.55144 5.79006 5.83090 5.99800 6.05464 6.22216 6.23753 6.28488 6.35982 6.48747 6.64654 6.82963 6.95226 7.05691 7.16603 7.36123 7.47946 7.60895 7.83791 7.90797 8.10977 8.46527 8.73159 8.76499 10.05606 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.009455 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.076972 B = 2960.657083 C = 4205.903970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.127 3.873 10 C -0.260 4.260 11 C 0.114 3.886 12 F -0.168 7.168 13 C -0.261 4.261 14 C -0.016 4.016 15 C -0.061 4.061 16 C -0.186 4.186 17 C -0.091 4.091 18 C -0.124 4.124 19 C -0.090 4.090 20 C -0.148 4.148 21 H 0.283 0.717 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -1.339 4.769 6.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.124 3.876 10 C -0.280 4.280 11 C 0.095 3.905 12 F -0.147 7.147 13 C -0.281 4.281 14 C -0.017 4.017 15 C -0.061 4.061 16 C -0.204 4.204 17 C -0.128 4.128 18 C -0.162 4.162 19 C -0.127 4.127 20 C -0.168 4.168 21 H 0.094 0.906 22 H 0.122 0.878 23 H 0.118 0.882 24 H 0.139 0.861 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.858 -1.216 4.735 6.892 hybrid contribution 0.468 0.530 -0.207 0.736 sum -4.390 -0.686 4.528 6.344 Atomic orbital electron populations 1.69821 1.07621 1.29601 1.33991 1.25948 0.94782 1.01510 0.92066 0.86271 0.80665 0.80266 0.79379 1.19335 1.19942 1.18303 1.19577 0.98078 0.90832 1.40064 0.90004 1.17325 0.90702 0.91410 0.88128 1.20982 1.05692 0.91704 1.09664 1.17403 0.95664 0.79727 0.97741 1.91333 1.89052 1.46363 1.87968 1.20232 1.01624 0.96980 1.09270 1.18068 0.93576 0.93065 0.96944 1.20740 0.93741 0.97571 0.94092 1.23394 0.97570 1.03799 0.95645 1.21221 0.92987 1.01077 0.97549 1.22420 0.97250 1.00957 0.95531 1.21252 0.91899 1.00242 0.99280 1.21501 0.98565 0.96075 1.00614 0.90570 0.87770 0.88233 0.86067 0.91744 0.91480 0.91267 0.91501 0.91008 0.91097 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 10.97 55.55 0.61 -19.09 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.82 9.05 -37.73 -0.34 -12.16 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.13 3.36 5.56 -106.88 -0.59 2.76 16 10 C -0.26 -6.57 9.76 -38.75 -0.38 -6.94 16 11 C 0.11 2.75 7.27 -39.56 -0.29 2.46 16 12 F -0.17 -3.86 17.26 2.25 0.04 -3.82 16 13 C -0.26 -6.08 9.76 -38.84 -0.38 -6.46 16 14 C -0.02 -0.37 5.64 -105.10 -0.59 -0.97 16 15 C -0.06 -1.21 5.50 -102.42 -0.56 -1.77 16 16 C -0.19 -3.28 10.67 -36.03 -0.38 -3.66 16 17 C -0.09 -1.28 6.80 -26.85 -0.18 -1.46 16 18 C -0.12 -1.70 7.17 -25.06 -0.18 -1.88 16 19 C -0.09 -1.49 6.74 -26.85 -0.18 -1.67 16 20 C -0.15 -3.78 8.41 -38.46 -0.32 -4.10 16 21 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 22 H 0.10 2.50 8.06 -52.49 -0.42 2.07 16 23 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 24 H 0.12 2.13 8.06 -52.48 -0.42 1.70 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.13 3.30 6.18 -52.49 -0.32 2.97 16 LS Contribution 272.02 15.07 4.10 4.10 Total: -1.00 -26.59 272.02 -8.44 -35.03 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -3.68 Total: 4.82 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: -4.48 Total: -34.09 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.59 -8.44 -35.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239788969.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.029 kcal (2) G-P(sol) polarization free energy of solvation -26.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds