Wall clock time and date at job start Thu Apr 9 2020 12:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86803 * 120.00344 * 2 1 4 4 H 1.48496 * 109.47215 * 274.87296 * 3 2 1 5 5 H 1.48494 * 109.46573 * 34.87130 * 3 2 1 6 6 H 1.48500 * 109.46889 * 154.86485 * 3 2 1 7 7 C 1.39920 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99976 * 199.62122 * 7 2 1 9 9 C 1.41308 * 120.00291 * 19.34784 * 7 2 1 10 10 C 1.40545 * 120.21038 * 216.43994 * 9 7 2 11 11 C 1.38609 * 119.66302 * 179.74518 * 10 9 7 12 12 C 1.48495 * 119.96127 * 180.26847 * 11 10 9 13 13 C 1.40835 * 126.21983 * 359.97438 * 12 11 10 14 14 N 1.30675 * 108.10178 * 179.81085 * 13 12 11 15 15 N 1.40015 * 108.52160 * 0.44043 * 14 13 12 16 16 H 0.97006 * 125.89509 * 179.69140 * 15 14 13 17 17 C 1.34840 * 108.20722 * 359.71515 * 15 14 13 18 18 C 1.39788 * 120.07923 * 0.55695 * 11 10 9 19 19 C 1.38262 * 120.42148 * 359.69477 * 18 11 10 20 20 C 1.38049 * 120.34080 * 0.02562 * 19 18 11 21 21 F 1.35106 * 120.04476 * 180.02562 * 20 19 18 22 22 H 0.96997 * 119.99937 * 359.97438 * 1 2 3 23 23 H 1.08008 * 120.16999 * 0.02562 * 10 9 7 24 24 H 1.08001 * 125.94853 * 359.97438 * 13 12 11 25 25 H 1.08004 * 126.19776 * 179.97438 * 17 15 14 26 26 H 1.08000 * 119.79028 * 179.71847 * 18 11 10 27 27 H 1.07999 * 119.82365 * 180.02562 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3872 2.1059 -1.3950 5 1 1.4954 2.6206 0.8005 6 1 3.5878 1.4125 0.5947 7 6 2.0081 -1.2118 -0.0005 8 1 3.0411 -1.2391 0.3135 9 6 1.3614 -2.4008 -0.4065 10 6 1.6531 -3.6181 0.2326 11 6 1.0081 -4.7766 -0.1712 12 6 1.3069 -6.0653 0.5035 13 6 2.2166 -6.2598 1.5608 14 7 2.1979 -7.5256 1.8848 15 7 1.2906 -8.1858 1.0473 16 1 1.0839 -9.1334 1.0673 17 6 0.7541 -7.2771 0.2079 18 6 0.0813 -4.7345 -1.2168 19 6 -0.2043 -3.5398 -1.8514 20 6 0.4236 -2.3745 -1.4595 21 9 0.1396 -1.2103 -2.0835 22 1 -0.4850 0.8400 0.0004 23 1 2.3727 -3.6499 1.0374 24 1 2.8220 -5.4954 2.0250 25 1 0.0202 -7.4731 -0.5598 26 1 -0.4151 -5.6408 -1.5307 27 1 -0.9223 -3.5182 -2.6579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240242244.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:50 Heat of formation + Delta-G solvation = 43.939857 kcal Electronic energy + Delta-G solvation = -15160.825143 eV Core-core repulsion = 12413.294869 eV Total energy + Delta-G solvation = -2747.530274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.071 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.89371 -40.76100 -37.17635 -33.66925 -31.54180 -30.76845 -29.93130 -27.34818 -25.19079 -22.17903 -21.66891 -20.46847 -19.57502 -17.91941 -16.70279 -15.82824 -15.21542 -14.44560 -14.29333 -14.13156 -13.90787 -13.64032 -12.77471 -12.61927 -12.41708 -11.71516 -11.50897 -11.28179 -11.13397 -10.93913 -10.65948 -10.42773 -10.11216 -9.38250 -9.38052 -9.10056 -8.57214 -7.56729 -6.77879 -6.67376 -4.40383 1.98725 2.50889 2.72199 3.11603 3.14369 3.16509 3.16745 3.62806 4.00613 4.68713 5.12930 5.20299 5.46594 5.80490 5.87438 6.00324 6.19247 6.20023 6.47062 6.73025 6.92492 7.09794 7.22463 7.47598 7.51117 7.61887 7.77594 7.84330 7.95110 8.18528 8.44420 8.80495 8.88494 10.25334 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.040961 B = 0.007024 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.409587 B = 3985.209051 C = 4540.032479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.474 4.474 8 H 0.084 0.916 9 C 0.089 3.911 10 C -0.180 4.180 11 C -0.004 4.004 12 C -0.164 4.164 13 C 0.063 3.937 14 N -0.307 5.307 15 N -0.485 5.485 16 H 0.434 0.566 17 C 0.049 3.951 18 C -0.204 4.204 19 C -0.134 4.134 20 C 0.037 3.963 21 F -0.144 7.144 22 H 0.282 0.718 23 H 0.104 0.896 24 H 0.185 0.815 25 H 0.175 0.825 26 H 0.096 0.904 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.375 -8.236 -0.348 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.102 0.898 9 C 0.086 3.914 10 C -0.199 4.199 11 C -0.005 4.005 12 C -0.175 4.175 13 C -0.124 4.124 14 N -0.130 5.130 15 N -0.193 5.193 16 H 0.277 0.723 17 C -0.097 4.097 18 C -0.224 4.224 19 C -0.153 4.153 20 C 0.016 3.984 21 F -0.122 7.122 22 H 0.093 0.907 23 H 0.122 0.878 24 H 0.202 0.798 25 H 0.192 0.808 26 H 0.114 0.886 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.632 -8.908 0.426 8.941 hybrid contribution -0.377 1.160 -0.678 1.395 sum 0.255 -7.748 -0.252 7.757 Atomic orbital electron populations 1.69778 1.07726 1.29657 1.33363 1.25772 0.94612 1.01118 0.92519 0.86296 0.80500 0.80844 0.79099 1.19374 1.20419 1.18618 1.19352 0.98942 0.91106 1.40912 0.89818 1.17488 0.90975 0.93351 0.89569 1.20868 1.05137 0.91635 1.02307 1.17682 0.97512 0.89781 0.95526 1.19242 1.02946 0.93749 1.01589 1.24036 0.98522 0.93521 0.96349 1.77116 1.12139 1.07608 1.16110 1.46102 1.34687 1.10239 1.28261 0.72274 1.22538 1.00444 0.89663 0.97099 1.20075 1.04698 0.96078 1.01516 1.20502 1.01013 0.92541 1.01273 1.17926 1.03717 0.80381 0.96356 1.91324 1.92567 1.47575 1.80781 0.90742 0.87763 0.79835 0.80793 0.88569 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.02 11.08 55.55 0.62 -20.40 15 2 C 0.08 2.05 4.52 -17.34 -0.08 1.97 15 3 Si 0.91 19.30 29.60 -169.99 -5.03 14.27 15 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 6 H -0.26 -5.42 7.11 56.52 0.40 -5.01 15 7 C -0.47 -12.58 8.92 -37.79 -0.34 -12.91 15 8 H 0.08 2.11 7.92 -52.49 -0.42 1.70 15 9 C 0.09 2.34 5.40 -106.80 -0.58 1.77 15 10 C -0.18 -4.19 9.31 -38.58 -0.36 -4.55 15 11 C 0.00 -0.07 5.87 -104.95 -0.62 -0.69 15 12 C -0.16 -2.94 6.04 -105.34 -0.64 -3.57 15 13 C 0.06 1.06 11.41 -17.06 -0.19 0.87 15 14 N -0.31 -4.96 12.67 30.80 0.39 -4.57 15 15 N -0.48 -6.38 7.33 30.64 0.22 -6.16 15 16 H 0.43 3.93 8.96 -182.66 -1.64 2.29 15 17 C 0.05 0.70 11.38 -16.88 -0.19 0.51 15 18 C -0.20 -4.22 9.57 -38.99 -0.37 -4.59 15 19 C -0.13 -3.05 9.99 -39.64 -0.40 -3.45 15 20 C 0.04 0.96 6.69 -38.59 -0.26 0.70 15 21 F -0.14 -3.93 14.23 2.25 0.03 -3.89 15 22 H 0.28 6.97 8.30 -40.82 -0.34 6.63 15 23 H 0.10 2.24 7.03 -52.48 -0.37 1.87 15 24 H 0.18 2.80 7.33 -52.49 -0.38 2.41 15 25 H 0.18 1.96 7.26 -52.48 -0.38 1.58 15 26 H 0.10 1.66 6.99 -52.49 -0.37 1.29 15 27 H 0.10 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 247.17 15.07 3.72 3.72 Total: -1.00 -30.10 247.17 -7.17 -37.28 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.11 Total: 3.70 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -4.02 Total: -23.95 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 1.23 Total: -31.13 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.03 Total: -3.89 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.10 -7.17 -37.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240242244.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.218 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds