Wall clock time and date at job start Thu Apr 9 2020 12:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 120.00116 * 2 1 4 4 H 1.48495 * 109.46991 * 270.00162 * 3 2 1 5 5 H 1.48506 * 109.47001 * 29.99960 * 3 2 1 6 6 H 1.48498 * 109.47109 * 150.00130 * 3 2 1 7 7 C 1.40009 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00712 * 159.88882 * 7 2 1 9 9 C 1.40823 * 119.99669 * 339.88899 * 7 2 1 10 10 C 1.41028 * 120.34537 * 323.48000 * 9 7 2 11 11 F 1.35109 * 120.09964 * 0.02562 * 10 9 7 12 12 C 1.37702 * 119.79913 * 180.27608 * 10 9 7 13 13 C 1.38847 * 120.52049 * 359.74608 * 12 10 9 14 14 C 1.38098 * 120.71156 * 0.02562 * 13 12 10 15 15 C 1.39061 * 120.18283 * 359.95356 * 14 13 12 16 16 C 1.47931 * 120.26433 * 180.02562 * 15 14 13 17 17 C 1.41116 * 126.36790 * 130.02405 * 16 15 14 18 18 N 1.30556 * 108.11535 * 179.97438 * 17 16 15 19 19 N 1.39950 * 108.85915 * 0.02562 * 18 17 16 20 20 H 0.96995 * 125.81677 * 179.97438 * 19 18 17 21 21 C 1.34722 * 108.37221 * 359.97438 * 19 18 17 22 22 H 0.96997 * 120.00377 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.73991 * 179.72733 * 12 10 9 24 24 H 1.07996 * 119.63774 * 179.97438 * 13 12 10 25 25 H 1.08001 * 119.90729 * 179.97438 * 14 13 12 26 26 H 1.07993 * 125.93939 * 359.96208 * 17 16 15 27 27 H 1.08002 * 126.30282 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0084 -1.2125 -0.0005 8 1 3.0390 -1.2409 -0.3221 9 6 1.3687 -2.3950 0.4183 10 6 0.4395 -2.3653 1.4787 11 9 0.1570 -1.1990 2.0996 12 6 -0.1752 -3.5293 1.8828 13 6 0.1085 -4.7326 1.2509 14 6 1.0113 -4.7855 0.2072 15 6 1.6487 -3.6277 -0.2251 16 6 2.6157 -3.6822 -1.3433 17 6 2.6262 -2.8485 -2.4818 18 7 3.6300 -3.2049 -3.2367 19 7 4.3003 -4.2702 -2.6248 20 1 5.0823 -4.7249 -2.9748 21 6 3.6743 -4.5567 -1.4667 22 1 -0.4850 0.8400 0.0004 23 1 -0.8834 -3.5061 2.6979 24 1 -0.3816 -5.6371 1.5798 25 1 1.2226 -5.7286 -0.2747 26 1 1.9256 -2.0541 -2.6922 27 1 3.9505 -5.3296 -0.7648 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240244108.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:52 Heat of formation + Delta-G solvation = 28.301114 kcal Electronic energy + Delta-G solvation = -15614.256334 eV Core-core repulsion = 12866.047913 eV Total energy + Delta-G solvation = -2748.208421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.071 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.87950 -41.74915 -38.86318 -35.45073 -33.04801 -31.97503 -31.28005 -29.06866 -26.98322 -23.55524 -22.91229 -22.20258 -20.74980 -19.29434 -18.67310 -17.14248 -17.00542 -16.28002 -15.91855 -15.62771 -15.23871 -15.13682 -14.59270 -14.22501 -13.65039 -13.58103 -13.18480 -13.02729 -12.90872 -12.36083 -12.27925 -11.91670 -11.69388 -11.16456 -10.86591 -10.39549 -9.77336 -9.05165 -8.72009 -8.57167 -6.26533 0.71982 1.00475 1.18330 1.36823 1.45696 1.49982 2.10123 2.22737 2.24014 2.79788 3.58776 4.00880 4.25561 4.34349 4.46735 4.58130 4.84656 4.90765 4.98993 5.20244 5.25465 5.39321 5.66582 5.77174 5.90168 6.10751 6.14328 6.38754 6.58377 6.64363 6.91029 6.94399 7.05229 8.38504 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.013299 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.316597 B = 2104.893415 C = 3308.571503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.042 3.958 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.479 4.479 8 H 0.074 0.926 9 C 0.068 3.932 10 C -0.002 4.002 11 F -0.162 7.162 12 C -0.147 4.147 13 C -0.199 4.199 14 C -0.094 4.094 15 C -0.102 4.102 16 C -0.178 4.178 17 C 0.067 3.933 18 N -0.336 5.336 19 N -0.465 5.465 20 H 0.452 0.548 21 C 0.065 3.935 22 H 0.285 0.715 23 H 0.115 0.885 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.163 0.837 27 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.172 -7.379 -1.208 9.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.508 4.508 8 H 0.092 0.908 9 C 0.065 3.935 10 C -0.022 4.022 11 F -0.141 7.141 12 C -0.167 4.167 13 C -0.218 4.218 14 C -0.112 4.112 15 C -0.104 4.104 16 C -0.189 4.189 17 C -0.119 4.119 18 N -0.159 5.159 19 N -0.174 5.174 20 H 0.299 0.701 21 C -0.083 4.083 22 H 0.095 0.905 23 H 0.133 0.867 24 H 0.154 0.846 25 H 0.150 0.850 26 H 0.181 0.819 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 5.574 -6.940 -2.295 9.192 hybrid contribution -0.217 1.042 0.834 1.353 sum 5.357 -5.898 -1.461 8.100 Atomic orbital electron populations 1.69810 1.08916 1.30445 1.34848 1.26462 0.95129 1.03755 0.92037 0.85513 0.79323 0.77536 0.79360 1.18611 1.19650 1.18744 1.19228 0.98789 0.91934 1.40868 0.90813 1.17850 0.91476 0.94151 0.89995 1.18220 1.05623 0.80831 0.97552 1.91265 1.92889 1.48529 1.81367 1.20933 1.01248 0.92544 1.01935 1.20557 1.04068 0.96418 1.00726 1.21009 0.96466 0.96937 0.96781 1.18153 1.02317 0.92913 0.97059 1.19140 1.00930 1.01477 0.97394 1.23868 0.96040 0.99006 0.92960 1.76940 1.10614 1.05475 1.22891 1.45975 1.26810 1.27649 1.16999 0.70088 1.23319 0.93470 1.00891 0.90663 0.90486 0.86663 0.84643 0.85029 0.81945 0.77049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.57 11.12 21.84 0.24 -44.33 15 2 C 0.04 2.22 4.50 85.27 0.38 2.60 15 3 Si 0.96 40.80 29.61 68.60 2.03 42.84 15 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.48 -25.63 7.32 23.33 0.17 -25.46 15 8 H 0.07 3.94 7.31 -2.91 -0.02 3.92 15 9 C 0.07 3.59 5.42 -21.07 -0.11 3.47 15 10 C 0.00 -0.10 6.68 22.83 0.15 0.05 15 11 F -0.16 -9.06 14.26 44.97 0.64 -8.42 15 12 C -0.15 -6.61 9.99 22.29 0.22 -6.39 15 13 C -0.20 -7.69 10.03 22.38 0.22 -7.47 15 14 C -0.09 -3.62 9.69 22.43 0.22 -3.40 15 15 C -0.10 -4.57 5.81 -19.62 -0.11 -4.68 15 16 C -0.18 -7.09 5.00 -20.09 -0.10 -7.19 15 17 C 0.07 2.77 10.62 85.59 0.91 3.68 15 18 N -0.34 -12.39 12.64 -56.34 -0.71 -13.10 15 19 N -0.46 -12.90 7.31 -56.16 -0.41 -13.31 15 20 H 0.45 8.30 8.96 -213.42 -1.91 6.39 15 21 C 0.07 1.92 11.95 84.16 1.01 2.92 15 22 H 0.28 14.42 8.30 -92.71 -0.77 13.65 15 23 H 0.12 4.64 8.06 -2.91 -0.02 4.62 15 24 H 0.14 4.19 8.06 -2.91 -0.02 4.17 15 25 H 0.13 4.09 8.06 -2.91 -0.02 4.06 15 26 H 0.16 7.27 7.96 -2.91 -0.02 7.25 15 27 H 0.21 4.33 8.06 -2.91 -0.02 4.31 15 Total: -1.00 -64.67 248.03 4.05 -60.62 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.70 Total: 17.58 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 2.96 Total: -41.87 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -0.88 Total: -70.74 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 0.64 Total: -8.42 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.84 kcal Total: -64.67 4.05 -60.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240244108.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.922 kcal (2) G-P(sol) polarization free energy of solvation -64.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds