Wall clock time and date at job start Thu Apr 9 2020 12:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86803 * 119.99923 * 2 1 4 4 H 1.48496 * 109.47447 * 270.00637 * 3 2 1 5 5 H 1.48503 * 109.46647 * 30.00919 * 3 2 1 6 6 H 1.48503 * 109.46849 * 150.00320 * 3 2 1 7 7 C 1.40102 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 164.39640 * 7 2 1 9 9 C 1.40641 * 119.99883 * 344.11067 * 7 2 1 10 10 C 1.41324 * 121.38770 * 335.22010 * 9 7 2 11 11 C 1.36242 * 119.05497 * 179.74353 * 10 9 7 12 12 N 1.32161 * 122.23423 * 0.54896 * 11 10 9 13 13 C 1.31436 * 123.20658 * 359.71060 * 12 11 10 14 14 C 1.39921 * 120.48289 * 0.02562 * 13 12 11 15 15 C 1.46926 * 121.10492 * 180.02562 * 14 13 12 16 16 C 1.36950 * 126.18570 * 309.97011 * 15 14 13 17 17 N 1.31097 * 113.84860 * 180.02562 * 16 15 14 18 18 C 1.29296 * 117.47187 * 359.97438 * 17 16 15 19 19 S 1.70917 * 110.64870 * 359.72981 * 18 17 16 20 20 H 0.96996 * 120.00220 * 359.97438 * 1 2 3 21 21 H 1.08007 * 120.46757 * 359.97438 * 10 9 7 22 22 H 1.08003 * 118.87853 * 180.25533 * 11 10 9 23 23 H 1.08002 * 119.75740 * 179.97438 * 13 12 11 24 24 H 1.08004 * 123.07805 * 359.97422 * 16 15 14 25 25 H 1.07994 * 124.67316 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0466 -1.4000 5 1 1.4388 2.6526 0.7003 6 1 3.5390 1.4401 0.7000 7 6 2.0079 -1.2133 -0.0005 8 1 3.0581 -1.2304 -0.2521 9 6 1.3451 -2.4082 0.3324 10 6 0.1875 -2.4064 1.1432 11 6 -0.4199 -3.5913 1.4318 12 7 0.0425 -4.7471 0.9878 13 6 1.1134 -4.8518 0.2330 14 6 1.8309 -3.7110 -0.1432 15 6 3.0295 -3.8122 -0.9870 16 6 4.0949 -4.6478 -0.7814 17 7 5.0370 -4.5380 -1.6863 18 6 4.8542 -3.6805 -2.6367 19 16 3.3525 -2.8858 -2.4507 20 1 -0.4850 0.8400 0.0004 21 1 -0.2120 -1.4786 1.5254 22 1 -1.3067 -3.5863 2.0483 23 1 1.4424 -5.8256 -0.0985 24 1 4.1539 -5.3339 0.0506 25 1 5.5522 -3.4952 -3.4396 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241500758.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:04 Heat of formation + Delta-G solvation = 45.598409 kcal Electronic energy + Delta-G solvation = -13259.218647 eV Core-core repulsion = 10942.140375 eV Total energy + Delta-G solvation = -2317.078272 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.037 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.41012 -39.65963 -36.16616 -33.53007 -32.14593 -29.62236 -27.90260 -26.16913 -23.59445 -23.06904 -20.69515 -19.58343 -18.83840 -17.49401 -16.84067 -16.27016 -16.12137 -15.21369 -14.92520 -14.63735 -14.45907 -14.12965 -13.88943 -13.33290 -13.12230 -12.82566 -12.38232 -12.04446 -11.83065 -11.35559 -10.65436 -10.35415 -10.02079 -9.84631 -9.74980 -9.12172 -8.77919 -6.64365 -0.26462 0.50131 0.89217 0.99873 1.25226 1.36068 1.47908 1.54275 2.05195 2.11424 2.67689 3.60960 3.64390 3.94998 4.33668 4.37437 4.54703 4.69510 4.88650 4.94042 5.14834 5.33995 5.40826 5.50718 5.79672 6.04907 6.39769 6.62672 6.69055 6.91088 7.70957 8.06989 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.013078 C = 0.008407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.319707 B = 2140.564400 C = 3329.814389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.044 3.956 3 Si 0.977 3.023 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.119 3.881 10 C -0.235 4.235 11 C 0.089 3.911 12 N -0.597 5.597 13 C 0.142 3.858 14 C -0.236 4.236 15 C -0.117 4.117 16 C -0.007 4.007 17 N -0.486 5.486 18 C -0.021 4.021 19 S 0.133 5.867 20 H 0.300 0.700 21 H 0.120 0.880 22 H 0.142 0.858 23 H 0.147 0.853 24 H 0.178 0.822 25 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 1.694 -3.618 6.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.177 4.177 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.473 4.473 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.258 4.258 11 C -0.058 4.058 12 N -0.312 5.312 13 C -0.018 4.018 14 C -0.244 4.244 15 C -0.239 4.239 16 C -0.159 4.159 17 N -0.199 5.199 18 C -0.316 4.316 19 S 0.390 5.610 20 H 0.111 0.889 21 H 0.138 0.862 22 H 0.159 0.841 23 H 0.165 0.835 24 H 0.195 0.805 25 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.037 1.557 -4.043 5.922 hybrid contribution 0.497 0.809 0.621 1.135 sum 4.533 2.367 -3.422 6.153 Atomic orbital electron populations 1.69775 1.09138 1.31910 1.30550 1.26867 0.95490 1.04654 0.90725 0.85256 0.79280 0.75558 0.80312 1.17764 1.18380 1.18253 1.19754 0.97730 0.91285 1.38533 0.89677 1.19191 0.90678 0.91585 0.87512 1.21860 1.01002 0.98547 1.04356 1.21963 0.98365 0.88275 0.97209 1.67142 1.16797 1.28714 1.18506 1.22524 0.90120 0.96522 0.92619 1.19878 1.00451 0.94817 1.09295 1.24480 0.99237 1.01272 0.98899 1.22498 0.89101 1.03424 1.00925 1.66025 1.30348 1.19766 1.03747 1.28816 1.01554 0.98212 1.02995 1.84104 1.16679 1.40055 1.20160 0.88899 0.86217 0.84095 0.83538 0.80522 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.73 10.94 21.85 0.24 -36.49 15 2 C 0.04 1.96 5.22 85.31 0.45 2.40 15 3 Si 0.98 33.91 29.59 68.60 2.03 35.94 15 4 H -0.25 -8.41 7.11 99.48 0.71 -7.70 15 5 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 6 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 7 C -0.44 -21.51 8.01 23.31 0.19 -21.32 15 8 H 0.09 4.06 6.83 -2.91 -0.02 4.04 15 9 C 0.12 6.03 5.76 -19.65 -0.11 5.92 15 10 C -0.24 -11.69 8.74 22.56 0.20 -11.50 15 11 C 0.09 4.17 11.04 84.18 0.93 5.10 15 12 N -0.60 -28.13 10.26 -196.07 -2.01 -30.14 15 13 C 0.14 6.41 10.94 85.16 0.93 7.35 15 14 C -0.24 -11.07 6.01 -18.31 -0.11 -11.18 15 15 C -0.12 -4.86 5.44 24.24 0.13 -4.73 15 16 C -0.01 -0.27 11.34 84.50 0.96 0.69 15 17 N -0.49 -17.34 10.50 -201.59 -2.12 -19.46 15 18 C -0.02 -0.64 12.20 130.62 1.59 0.95 15 19 S 0.13 4.79 21.74 -56.49 -1.23 3.56 15 20 H 0.30 12.36 8.29 -92.71 -0.77 11.59 15 21 H 0.12 6.01 6.26 -2.91 -0.02 5.99 15 22 H 0.14 5.70 8.06 -2.91 -0.02 5.68 15 23 H 0.15 5.76 8.06 -2.91 -0.02 5.74 15 24 H 0.18 6.16 8.06 -2.91 -0.02 6.14 15 25 H 0.23 4.81 8.06 -2.91 -0.02 4.78 15 Total: -1.00 -56.04 242.66 3.28 -52.76 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 1.22 Total: 20.14 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 5.15 Total: -26.32 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.89 Total: -86.08 kcal Atomic # 14 Polarization: 33.91 SS G_CDS: 2.03 Total: 35.94 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.23 Total: 3.56 kcal Total: -56.04 3.28 -52.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241500758.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.360 kcal (2) G-P(sol) polarization free energy of solvation -56.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds