Wall clock time and date at job start Thu Apr 9 2020 12:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47380 * 2 1 4 4 C 1.52996 * 109.47598 * 239.99499 * 2 1 3 5 5 C 1.50708 * 109.46912 * 119.99443 * 2 1 3 6 6 C 1.32585 * 119.99795 * 359.97438 * 5 2 1 7 7 C 1.47780 * 119.99973 * 179.97438 * 6 5 2 8 8 C 1.39109 * 119.63860 * 179.72609 * 7 6 5 9 9 C 1.40807 * 118.74745 * 179.77832 * 8 7 6 10 10 C 1.41537 * 120.97831 * 180.26160 * 9 8 7 11 11 H 1.08002 * 119.99598 * 203.50399 * 10 9 8 12 12 C 1.40040 * 119.99969 * 23.50369 * 10 9 8 13 13 N 1.30734 * 120.00137 * 17.04235 * 12 10 9 14 14 Si 1.86803 * 120.00056 * 197.04473 * 12 10 9 15 15 H 1.48502 * 109.47121 * 94.64773 * 14 12 10 16 16 H 1.48503 * 109.47214 * 214.64858 * 14 12 10 17 17 H 1.48498 * 109.47047 * 334.65055 * 14 12 10 18 18 C 1.41160 * 118.03993 * 0.49044 * 9 8 7 19 19 C 1.37743 * 119.11066 * 359.74862 * 18 9 8 20 20 N 1.31896 * 121.18313 * 0.02562 * 19 18 9 21 21 H 1.09007 * 109.47225 * 300.00495 * 1 2 3 22 22 H 1.08999 * 109.46661 * 60.00006 * 1 2 3 23 23 H 1.08995 * 109.47439 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47408 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.46529 * 299.99945 * 3 2 1 26 26 H 1.08996 * 109.47187 * 59.99175 * 3 2 1 27 27 H 1.08995 * 109.47019 * 300.00616 * 4 2 1 28 28 H 1.08998 * 109.46816 * 59.99746 * 4 2 1 29 29 H 1.09001 * 109.47358 * 180.02562 * 4 2 1 30 30 H 1.08002 * 119.99668 * 180.02562 * 5 2 1 31 31 H 1.08002 * 120.00537 * 0.02562 * 6 5 2 32 32 H 1.07998 * 120.62195 * 0.02562 * 8 7 6 33 33 H 0.96997 * 119.99889 * 179.97438 * 13 12 10 34 34 H 1.08000 * 120.43812 * 179.77694 * 18 9 8 35 35 H 1.08010 * 119.40637 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.1706 -1.2136 2.1036 7 6 1.6631 -1.9107 3.3100 8 6 0.7525 -2.4309 4.2239 9 6 1.2423 -3.0955 5.3645 10 6 0.3580 -3.6476 6.3219 11 1 0.6919 -3.8070 7.3366 12 6 -0.9497 -3.9870 5.9535 13 7 -1.2607 -4.1144 4.6901 14 14 -2.2498 -4.2577 7.2673 15 1 -3.0072 -2.9984 7.4811 16 1 -3.1818 -5.3274 6.8285 17 1 -1.5940 -4.6625 8.5366 18 6 2.6412 -3.1908 5.5274 19 6 3.4662 -2.6401 4.5717 20 7 2.9716 -2.0284 3.5130 21 1 -0.3634 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2076 -2.1391 29 1 3.1301 -0.7217 -1.2488 30 1 3.0941 -0.8086 1.4017 31 1 0.1088 -1.1150 1.9327 32 1 -0.3102 -2.3304 4.0596 33 1 -2.1664 -4.3499 4.4350 34 1 3.0589 -3.6891 6.3898 35 1 4.5373 -2.7106 4.6913 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241562766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:12 Heat of formation + Delta-G solvation = 14.858960 kcal Electronic energy + Delta-G solvation = -15444.518289 eV Core-core repulsion = 13020.446283 eV Total energy + Delta-G solvation = -2424.072006 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.42340 -37.31655 -34.16240 -32.06178 -30.43587 -28.24751 -27.04619 -27.03166 -25.95397 -22.52719 -21.66947 -19.89922 -17.90040 -16.93734 -15.74121 -15.01462 -14.55583 -14.17758 -13.93990 -13.91397 -13.61944 -12.66411 -12.48073 -12.39793 -12.14880 -11.78727 -11.48392 -11.45159 -11.38192 -11.23078 -10.90513 -10.78198 -10.53029 -10.28953 -10.24346 -9.71989 -9.48535 -9.05718 -8.02095 -7.94459 -7.10597 -6.83746 -4.59619 2.15611 2.79140 3.01494 3.05218 3.17644 3.57842 3.84424 4.68781 5.01767 5.09757 5.25235 5.57679 5.70571 5.72876 5.78323 5.78830 5.96333 5.97874 6.05750 6.11499 6.22563 6.26095 6.42575 6.50775 6.53522 6.77932 6.86563 6.98827 7.10695 7.26363 7.33774 7.49728 7.65498 7.87960 8.12365 8.45706 8.73466 8.74964 9.62116 10.05935 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.030126 B = 0.006311 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.199049 B = 4435.597927 C = 5111.854863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.143 4.143 6 C -0.095 4.095 7 C 0.128 3.872 8 C -0.191 4.191 9 C 0.124 3.876 10 C -0.457 4.457 11 H 0.081 0.919 12 C 0.077 3.923 13 N -0.786 5.786 14 Si 0.912 3.088 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.276 4.276 19 C 0.101 3.899 20 N -0.566 5.566 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.283 0.717 34 H 0.099 0.901 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 5.424 -6.343 8.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.192 4.192 4 C -0.192 4.192 5 C -0.163 4.163 6 C -0.113 4.113 7 C -0.002 4.002 8 C -0.214 4.214 9 C 0.116 3.884 10 C -0.488 4.488 11 H 0.100 0.900 12 C -0.142 4.142 13 N -0.411 5.411 14 Si 0.736 3.264 15 H -0.192 1.192 16 H -0.201 1.201 17 H -0.184 1.184 18 C -0.299 4.299 19 C -0.055 4.055 20 N -0.281 5.281 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.531 5.714 -7.129 9.152 hybrid contribution -1.221 -0.707 1.303 1.921 sum -0.690 5.007 -5.826 7.713 Atomic orbital electron populations 1.21963 0.94910 1.02020 1.01284 1.19601 0.95192 0.94954 0.94221 1.21800 1.00980 0.95180 1.01203 1.21799 1.00975 1.00301 0.96122 1.23143 1.00200 0.98735 0.94173 1.21729 0.98532 0.97777 0.93289 1.19660 0.89373 0.97014 0.94132 1.22287 0.99873 1.02175 0.97045 1.17797 0.91283 0.87683 0.91658 1.19623 0.95271 1.36392 0.97513 0.90041 1.25976 0.99596 0.92513 0.96128 1.69774 1.21091 1.32813 1.17441 0.86235 0.79891 0.78866 0.81396 1.19181 1.20123 1.18433 1.21892 0.94562 1.10833 1.02603 1.21809 0.97941 0.95059 0.90695 1.67369 1.14369 1.22894 1.23505 0.92337 0.93139 0.92208 0.92695 0.93080 0.92667 0.92601 0.93081 0.92697 0.86266 0.86707 0.85518 0.90595 0.88240 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 7.13 37.16 0.26 -1.67 16 2 C -0.04 -0.56 0.99 -155.66 -0.15 -0.72 16 3 C -0.13 -1.68 8.46 37.16 0.31 -1.37 16 4 C -0.13 -1.71 8.46 37.16 0.31 -1.40 16 5 C -0.14 -2.58 8.31 -36.21 -0.30 -2.88 16 6 C -0.09 -1.95 8.86 -37.59 -0.33 -2.29 16 7 C 0.13 3.17 6.70 -83.17 -0.56 2.61 16 8 C -0.19 -5.06 8.51 -38.29 -0.33 -5.38 16 9 C 0.12 3.33 5.61 -106.56 -0.60 2.74 16 10 C -0.46 -12.02 9.12 -37.65 -0.34 -12.36 16 11 H 0.08 2.05 7.90 -52.49 -0.41 1.64 16 12 C 0.08 1.91 5.20 -17.34 -0.09 1.82 16 13 N -0.79 -19.94 10.91 55.55 0.61 -19.34 16 14 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 15 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 16 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 C -0.28 -6.88 9.90 -38.65 -0.38 -7.26 16 19 C 0.10 2.39 11.15 -17.71 -0.20 2.19 16 20 N -0.57 -13.95 9.28 -10.04 -0.09 -14.05 16 21 H 0.06 0.80 7.50 -51.92 -0.39 0.41 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.84 7.50 -51.93 -0.39 0.45 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.12 2.33 7.37 -52.49 -0.39 1.94 16 31 H 0.12 2.21 5.73 -52.49 -0.30 1.90 16 32 H 0.13 3.39 6.18 -52.49 -0.32 3.06 16 33 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 34 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 LS Contribution 293.06 15.07 4.42 4.42 Total: -1.00 -27.81 293.06 -7.63 -35.44 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.14 Total: 6.30 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.39 Total: -25.98 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.51 Total: -33.38 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.81 -7.63 -35.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241562766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.300 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds