Wall clock time and date at job start Thu Apr 9 2020 12:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47232 * 2 1 4 4 C 1.53000 * 109.47135 * 239.99775 * 2 1 3 5 5 C 1.50701 * 109.47240 * 119.99480 * 2 1 3 6 6 C 1.33208 * 119.99984 * 0.02562 * 5 2 1 7 7 C 1.47103 * 120.00146 * 179.97438 * 6 5 2 8 8 C 1.39605 * 120.80830 * 359.97354 * 7 6 5 9 9 N 1.31597 * 120.61876 * 180.02562 * 8 7 6 10 10 C 1.32261 * 122.53551 * 0.02562 * 9 8 7 11 11 C 1.36424 * 121.58056 * 359.97438 * 10 9 8 12 12 C 1.41145 * 119.12821 * 0.02562 * 11 10 9 13 13 C 1.40802 * 121.12046 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99909 * 204.97894 * 13 12 11 15 15 C 1.40200 * 120.00392 * 24.97410 * 13 12 11 16 16 N 1.30678 * 119.99443 * 13.75757 * 15 13 12 17 17 Si 1.86800 * 120.00355 * 193.75875 * 15 13 12 18 18 H 1.48493 * 109.46979 * 89.99899 * 17 15 13 19 19 H 1.48501 * 109.46915 * 210.00038 * 17 15 13 20 20 H 1.48495 * 109.46871 * 329.99900 * 17 15 13 21 21 H 1.08996 * 109.47034 * 300.00330 * 1 2 3 22 22 H 1.08997 * 109.47100 * 60.00386 * 1 2 3 23 23 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47592 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.47250 * 299.99922 * 3 2 1 26 26 H 1.08998 * 109.47113 * 59.99417 * 3 2 1 27 27 H 1.08998 * 109.47171 * 299.99998 * 4 2 1 28 28 H 1.08998 * 109.46789 * 60.00175 * 4 2 1 29 29 H 1.09004 * 109.46834 * 179.97438 * 4 2 1 30 30 H 1.08001 * 119.99911 * 179.97438 * 5 2 1 31 31 H 1.08002 * 119.99581 * 359.97438 * 6 5 2 32 32 H 1.07992 * 119.69193 * 359.97438 * 8 7 6 33 33 H 1.08006 * 119.20495 * 180.27239 * 10 9 8 34 34 H 1.08002 * 120.43647 * 179.97438 * 11 10 9 35 35 H 0.97005 * 119.99258 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.1668 -1.2169 2.1072 7 6 1.6571 -1.9108 3.3080 8 6 3.0259 -2.0484 3.5455 9 7 3.4604 -2.6703 4.6207 10 6 2.6428 -3.1909 5.5206 11 6 1.2876 -3.1121 5.3850 12 6 0.7469 -2.4594 4.2563 13 6 -0.6453 -2.3533 4.0746 14 1 -1.0528 -2.2352 3.0814 15 6 -1.5026 -2.4011 5.1829 16 7 -1.0180 -2.2732 6.3897 17 14 -3.3376 -2.6477 4.9344 18 1 -3.6478 -4.0998 4.9449 19 1 -4.0802 -1.9749 6.0304 20 1 -3.7433 -2.0642 3.6306 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 3.0942 -0.8093 1.4012 31 1 0.1049 -1.1182 1.9362 32 1 3.7348 -1.6416 2.8397 33 1 3.0581 -3.6862 6.3859 34 1 0.6371 -3.5442 6.1310 35 1 -1.6113 -2.3059 7.1565 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241564701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:17 Heat of formation + Delta-G solvation = 1.593669 kcal Electronic energy + Delta-G solvation = -15697.524009 eV Core-core repulsion = 13272.876777 eV Total energy + Delta-G solvation = -2424.647232 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31021 -38.52562 -36.09958 -34.06948 -32.23312 -29.81316 -28.22848 -27.97457 -27.59012 -24.52268 -23.25973 -21.32313 -19.51329 -18.95078 -17.55813 -16.54047 -16.36669 -15.85612 -15.35735 -14.96302 -14.82701 -14.44239 -14.26822 -14.11324 -13.25344 -13.18380 -13.08562 -12.93255 -12.71158 -12.47834 -12.44913 -12.01810 -11.88015 -11.83697 -11.41931 -11.35434 -11.29581 -10.86556 -9.87296 -9.83127 -8.89707 -8.67240 -6.54923 0.40479 0.96475 1.36424 1.50176 1.53892 2.02180 2.14066 2.73173 3.76299 3.89871 3.96116 4.09120 4.24118 4.41260 4.55580 4.59178 4.75887 4.87070 4.90326 4.95846 4.98001 5.04129 5.09997 5.10564 5.15371 5.25383 5.38012 5.41930 5.48553 5.54790 5.56816 5.84103 6.02505 6.07520 6.30248 6.49126 6.76378 6.79045 7.69567 8.17349 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.008728 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.352010 B = 3207.365205 C = 4345.849749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.034 4.034 3 C -0.132 4.132 4 C -0.131 4.131 5 C -0.185 4.185 6 C -0.080 4.080 7 C -0.244 4.244 8 C 0.110 3.890 9 N -0.591 5.591 10 C 0.072 3.928 11 C -0.231 4.231 12 C 0.106 3.894 13 C -0.464 4.464 14 H 0.087 0.913 15 C 0.035 3.965 16 N -0.809 5.809 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.254 1.254 21 H 0.044 0.956 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 3.697 -9.508 10.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 C -0.189 4.189 4 C -0.188 4.188 5 C -0.203 4.203 6 C -0.098 4.098 7 C -0.249 4.249 8 C -0.047 4.047 9 N -0.306 5.306 10 C -0.076 4.076 11 C -0.253 4.253 12 C 0.098 3.902 13 C -0.494 4.494 14 H 0.105 0.895 15 C -0.183 4.183 16 N -0.434 5.434 17 Si 0.807 3.193 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.177 1.177 21 H 0.063 0.937 22 H 0.091 0.909 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.687 3.611 -9.063 9.780 hybrid contribution -1.507 -0.213 0.519 1.608 sum -2.194 3.398 -8.543 9.452 Atomic orbital electron populations 1.21930 0.94901 1.01390 1.01703 1.19543 0.95227 0.95485 0.93102 1.21785 1.01159 0.94224 1.01718 1.21778 1.01151 0.99758 0.96102 1.23258 0.98300 1.02173 0.96608 1.21538 0.99220 0.96790 0.92278 1.20207 0.93917 1.09671 1.01094 1.22652 0.93120 0.94924 0.94043 1.67341 1.40211 1.17534 1.05482 1.22051 0.90781 0.97654 0.97128 1.21978 0.95438 1.05734 1.02183 1.18311 0.94130 0.87118 0.90632 1.19815 0.91095 1.43236 0.95235 0.89458 1.26967 1.06746 0.90776 0.93768 1.69780 1.40413 1.32630 1.00532 0.85114 0.74733 0.79735 0.79747 1.18423 1.18974 1.17703 0.93699 0.90870 0.93438 0.92276 0.90960 0.93845 0.93598 0.90994 0.92289 0.87846 0.87264 0.83505 0.84224 0.86418 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 7.13 71.98 0.51 -3.34 16 2 C -0.03 -0.91 0.99 -52.93 -0.05 -0.96 16 3 C -0.13 -3.09 8.46 71.98 0.61 -2.48 16 4 C -0.13 -2.99 8.46 71.98 0.61 -2.38 16 5 C -0.18 -6.43 8.21 24.55 0.20 -6.23 16 6 C -0.08 -3.36 8.45 23.46 0.20 -3.16 16 7 C -0.24 -12.09 5.94 -19.58 -0.12 -12.21 16 8 C 0.11 5.26 10.59 85.06 0.90 6.16 16 9 N -0.59 -29.65 10.31 -196.02 -2.02 -31.67 16 10 C 0.07 3.58 11.08 84.20 0.93 4.52 16 11 C -0.23 -12.34 8.72 22.56 0.20 -12.14 16 12 C 0.11 5.71 5.63 -20.89 -0.12 5.60 16 13 C -0.46 -23.97 8.52 23.37 0.20 -23.78 16 14 H 0.09 4.30 6.62 -2.91 -0.02 4.29 16 15 C 0.04 1.70 5.25 85.34 0.45 2.15 16 16 N -0.81 -40.52 10.82 21.87 0.24 -40.29 16 17 Si 0.99 35.99 29.58 68.60 2.03 38.01 16 18 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 20 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 21 H 0.04 1.33 7.50 -2.39 -0.02 1.31 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.37 7.50 -2.39 -0.02 1.35 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.10 3.53 6.09 -2.91 -0.02 3.52 16 31 H 0.11 4.63 4.35 -2.91 -0.01 4.61 16 32 H 0.15 6.08 6.20 -2.91 -0.02 6.06 16 33 H 0.14 6.10 8.06 -2.91 -0.02 6.08 16 34 H 0.12 6.37 6.16 -2.91 -0.02 6.35 16 35 H 0.29 13.19 8.29 -92.70 -0.77 12.42 16 Total: -1.00 -58.29 287.22 5.84 -52.45 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 1.07 Total: 29.76 kcal Atomic # 6 Polarization: -52.79 SS G_CDS: 4.52 Total: -48.27 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -1.79 Total: -71.95 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.01 kcal Total: -58.29 5.84 -52.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241564701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.046 kcal (2) G-P(sol) polarization free energy of solvation -58.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds