Wall clock time and date at job start Thu Apr 9 2020 12:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48492 * 109.47298 * 239.99707 * 3 2 1 5 5 H 1.48501 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46908 * 119.99402 * 3 2 1 7 7 C 1.40040 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99863 * 197.26685 * 7 2 1 9 9 C 1.41531 * 119.99880 * 17.26997 * 7 2 1 10 10 C 1.41180 * 120.97839 * 203.16464 * 9 7 2 11 11 C 1.37683 * 119.09658 * 180.02562 * 10 9 7 12 12 N 1.31969 * 121.16407 * 359.74713 * 11 10 9 13 13 C 1.32835 * 122.19273 * 0.52801 * 12 11 10 14 14 C 1.48220 * 119.62482 * 179.74702 * 13 12 11 15 15 C 1.34923 * 122.98203 * 359.72808 * 14 13 12 16 16 S 1.76174 * 107.86866 * 180.24098 * 15 14 13 17 17 C 1.70912 * 90.44145 * 359.66236 * 16 15 14 18 18 N 1.28747 * 110.51756 * 0.34305 * 17 16 15 19 19 C 1.39021 * 120.75122 * 359.47632 * 13 12 11 20 20 H 0.96998 * 120.00143 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.45630 * 0.02562 * 10 9 7 22 22 H 1.07999 * 119.41581 * 179.97438 * 11 10 9 23 23 H 1.07997 * 126.06405 * 359.97438 * 15 14 13 24 24 H 1.08009 * 124.73811 * 180.02562 * 17 16 15 25 25 H 1.07994 * 120.62117 * 180.23644 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2764 2.7465 0.0006 6 1 3.0950 1.6964 1.2126 7 6 2.0076 -1.2128 0.0005 8 1 3.0511 -1.2337 0.2782 9 6 1.3477 -2.4110 -0.3628 10 6 1.8285 -3.6656 0.0708 11 6 1.1567 -4.8067 -0.3061 12 7 0.0738 -4.7449 -1.0579 13 6 -0.4178 -3.5917 -1.4972 14 6 -1.6348 -3.5889 -2.3432 15 6 -2.2814 -4.7169 -2.7036 16 16 -3.6562 -4.2557 -3.7041 17 6 -3.2417 -2.6061 -3.5366 18 7 -2.1848 -2.4777 -2.8126 19 6 0.1930 -2.3871 -1.1679 20 1 -0.4850 0.8400 -0.0004 21 1 2.7113 -3.7294 0.6897 22 1 1.5202 -5.7692 0.0223 23 1 -2.0029 -5.7241 -2.4311 24 1 -3.7869 -1.7863 -3.9807 25 1 -0.2107 -1.4505 -1.5231 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241887958.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:25 Heat of formation + Delta-G solvation = 67.333527 kcal Electronic energy + Delta-G solvation = -13109.055925 eV Core-core repulsion = 10792.920159 eV Total energy + Delta-G solvation = -2316.135767 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.39437 -37.83554 -34.16126 -31.32758 -30.34094 -28.52764 -26.09298 -24.71303 -22.07047 -21.41703 -19.22152 -17.97196 -16.99512 -15.43687 -15.28814 -14.36978 -14.08248 -14.05643 -13.95322 -12.82903 -12.66424 -12.60037 -12.24153 -11.47563 -11.29122 -11.14287 -10.89692 -10.32392 -9.90245 -9.45183 -9.22334 -9.06904 -8.92263 -8.10545 -8.00549 -7.26955 -6.85132 -4.60197 1.09634 1.78958 2.10866 2.42133 2.80667 3.02178 3.04329 3.18667 3.68371 3.84917 4.54066 4.66656 5.39677 5.65411 5.80813 5.96130 6.08419 6.46439 6.74606 6.83608 6.92180 7.12288 7.29129 7.47148 7.81408 8.07233 8.24370 8.41902 8.70746 8.71631 9.50317 10.05493 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.029967 B = 0.008071 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.134116 B = 3468.539474 C = 4327.829002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.120 3.880 10 C -0.273 4.273 11 C 0.105 3.895 12 N -0.567 5.567 13 C 0.153 3.847 14 C 0.135 3.865 15 C -0.223 4.223 16 S 0.065 5.935 17 C 0.021 3.979 18 N -0.445 5.445 19 C -0.163 4.163 20 H 0.286 0.714 21 H 0.102 0.898 22 H 0.124 0.876 23 H 0.182 0.818 24 H 0.195 0.805 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -2.312 -4.990 7.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.112 3.888 10 C -0.297 4.297 11 C -0.051 4.051 12 N -0.283 5.283 13 C 0.021 3.979 14 C 0.005 3.995 15 C -0.363 4.363 16 S 0.316 5.684 17 C -0.280 4.280 18 N -0.157 5.157 19 C -0.186 4.186 20 H 0.097 0.903 21 H 0.121 0.879 22 H 0.142 0.858 23 H 0.199 0.801 24 H 0.212 0.788 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.103 -2.908 -5.647 8.808 hybrid contribution 1.465 1.594 0.856 2.328 sum -4.637 -1.315 -4.791 6.796 Atomic orbital electron populations 1.69758 1.07694 1.29972 1.32532 1.26012 0.94786 1.01655 0.92031 0.86282 0.80124 0.79788 0.80106 1.18620 1.20116 1.18844 1.19589 0.98061 0.90796 1.39955 0.89881 1.17826 0.90686 0.92475 0.87856 1.21896 1.05011 0.93810 1.08964 1.21739 0.91553 0.96854 0.94956 1.67116 1.15387 1.27990 1.17830 1.18313 0.92309 0.90317 0.96938 1.18793 0.96495 0.85870 0.98344 1.27053 0.98952 1.04499 1.05762 1.83678 1.29783 1.05668 1.49283 1.28238 0.97954 0.99389 1.02376 1.66114 1.08513 1.31413 1.09692 1.22387 0.98496 0.97665 1.00086 0.90287 0.87937 0.85823 0.80112 0.78786 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.08 10.91 55.55 0.61 -19.47 15 2 C 0.08 1.89 5.20 -17.34 -0.09 1.80 15 3 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 15 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.45 -11.89 9.12 -37.65 -0.34 -12.23 15 8 H 0.08 2.06 7.90 -52.49 -0.41 1.64 15 9 C 0.12 3.22 5.61 -106.56 -0.60 2.63 15 10 C -0.27 -6.69 9.90 -38.67 -0.38 -7.08 15 11 C 0.10 2.43 11.15 -17.70 -0.20 2.23 15 12 N -0.57 -13.88 9.81 -9.95 -0.10 -13.97 15 13 C 0.15 3.89 6.74 -83.04 -0.56 3.33 15 14 C 0.13 2.99 6.64 -84.62 -0.56 2.43 15 15 C -0.22 -4.13 10.86 29.56 0.32 -3.81 15 16 S 0.07 0.93 23.21 -107.50 -2.50 -1.57 15 17 C 0.02 0.33 12.19 51.47 0.63 0.96 15 18 N -0.44 -9.33 9.88 -12.29 -0.12 -9.46 15 19 C -0.16 -4.41 8.36 -38.33 -0.32 -4.73 15 20 H 0.29 6.75 8.29 -40.82 -0.34 6.41 15 21 H 0.10 2.28 8.06 -52.49 -0.42 1.86 15 22 H 0.12 2.39 8.06 -52.49 -0.42 1.97 15 23 H 0.18 3.18 7.99 -52.49 -0.42 2.76 15 24 H 0.20 2.25 8.06 -52.48 -0.42 1.83 15 25 H 0.14 3.96 5.79 -52.49 -0.30 3.66 15 LS Contribution 244.63 15.07 3.69 3.69 Total: -1.00 -29.33 244.63 -7.10 -36.43 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -1.54 Total: 5.51 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -2.10 Total: -14.48 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.39 Total: -42.90 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.33 -7.10 -36.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241887958.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.763 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds