Wall clock time and date at job start Thu Apr 9 2020 12:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48502 * 109.46883 * 269.99889 * 3 2 1 5 5 H 1.48496 * 109.46887 * 29.99259 * 3 2 1 6 6 H 1.48494 * 109.47263 * 149.99831 * 3 2 1 7 7 C 1.39998 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99708 * 163.24179 * 7 2 1 9 9 C 1.40822 * 120.00292 * 343.24729 * 7 2 1 10 10 C 1.41009 * 120.11437 * 334.25443 * 9 7 2 11 11 C 1.36073 * 119.92886 * 179.76372 * 10 9 7 12 12 C 1.40288 * 120.15496 * 0.51073 * 11 10 9 13 13 C 1.47347 * 119.88301 * 179.75939 * 12 11 10 14 14 N 1.31761 * 125.85425 * 179.68361 * 13 12 11 15 15 C 1.33479 * 109.24937 * 180.02562 * 14 13 12 16 16 C 1.35261 * 108.42182 * 0.02562 * 15 14 13 17 17 N 1.36657 * 125.85636 * 359.72979 * 13 12 11 18 18 H 0.97001 * 126.50992 * 359.97438 * 17 13 12 19 19 C 1.40068 * 120.23020 * 359.48747 * 12 11 10 20 20 C 1.36438 * 120.07004 * 0.25231 * 19 12 11 21 21 F 1.35097 * 120.07876 * 179.97438 * 20 19 12 22 22 H 0.96994 * 120.00191 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.03285 * 0.02562 * 10 9 7 24 24 H 1.07998 * 119.92261 * 180.25386 * 11 10 9 25 25 H 1.08000 * 125.79056 * 180.02562 * 15 14 13 26 26 H 1.07997 * 126.46985 * 180.26549 * 16 15 14 27 27 H 1.07998 * 119.96170 * 180.27111 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6526 0.6999 6 1 3.5398 1.4401 0.7000 7 6 2.0082 -1.2124 0.0005 8 1 3.0538 -1.2324 -0.2691 9 6 1.3489 -2.4060 0.3526 10 6 0.2186 -2.3679 1.1949 11 6 -0.4184 -3.5231 1.5288 12 6 0.0530 -4.7529 1.0456 13 6 -0.6382 -6.0005 1.4153 14 7 -0.3020 -7.2136 1.0260 15 6 -1.1518 -8.0967 1.5546 16 6 -2.0565 -7.4246 2.3025 17 7 -1.7385 -6.0979 2.2198 18 1 -2.2054 -5.3646 2.6503 19 6 1.1751 -4.7983 0.2085 20 6 1.8178 -3.6453 -0.1364 21 9 2.9004 -3.6890 -0.9434 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1435 -1.4226 1.5711 24 1 -1.2865 -3.4934 2.1706 25 1 -1.1221 -9.1666 1.4098 26 1 -2.8728 -7.8554 2.8632 27 1 1.5317 -5.7470 -0.1644 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242016283.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:39 Heat of formation + Delta-G solvation = 19.066555 kcal Electronic energy + Delta-G solvation = -15064.676665 eV Core-core repulsion = 12316.067804 eV Total energy + Delta-G solvation = -2748.608861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.071 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.29147 -41.25515 -37.42920 -34.11855 -32.01558 -30.79800 -29.27964 -28.28731 -25.35438 -22.12823 -21.65017 -20.28249 -19.80454 -17.84280 -17.58650 -15.72399 -15.28604 -14.69210 -14.42696 -14.27257 -14.01580 -13.41558 -13.35215 -12.94120 -12.72711 -11.99645 -11.85980 -11.38441 -11.22519 -10.99394 -10.71146 -10.07565 -9.83901 -9.59615 -9.48622 -9.45094 -8.43758 -7.64096 -7.22657 -7.05298 -4.60160 1.93486 2.71335 2.80424 2.92613 2.97195 3.05201 3.60516 3.71092 3.80205 4.43971 5.14645 5.33196 5.46072 5.71964 5.85814 5.97146 6.13835 6.23198 6.57145 6.74174 6.84735 6.94415 7.24046 7.29946 7.34626 7.70702 7.78754 7.86301 7.93414 8.28041 8.44929 8.60947 8.68920 9.81639 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.046545 B = 0.006587 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.424238 B = 4249.520528 C = 4777.906471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.431 4.431 8 H 0.089 0.911 9 C 0.098 3.902 10 C -0.153 4.153 11 C -0.083 4.083 12 C -0.159 4.159 13 C 0.306 3.694 14 N -0.510 5.510 15 C -0.026 4.026 16 C -0.089 4.089 17 N -0.577 5.577 18 H 0.415 0.585 19 C -0.063 4.063 20 C -0.032 4.032 21 F -0.161 7.161 22 H 0.288 0.712 23 H 0.128 0.872 24 H 0.090 0.910 25 H 0.161 0.839 26 H 0.167 0.833 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 -2.783 4.315 6.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.459 4.459 8 H 0.107 0.893 9 C 0.093 3.907 10 C -0.172 4.172 11 C -0.103 4.103 12 C -0.163 4.163 13 C 0.048 3.952 14 N -0.229 5.229 15 C -0.176 4.176 16 C -0.223 4.223 17 N -0.179 5.179 18 H 0.253 0.747 19 C -0.084 4.084 20 C -0.052 4.052 21 F -0.140 7.140 22 H 0.099 0.901 23 H 0.146 0.854 24 H 0.108 0.892 25 H 0.178 0.822 26 H 0.184 0.816 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.281 -2.918 3.763 5.782 hybrid contribution -0.674 1.097 0.617 1.428 sum -3.955 -1.821 4.380 6.176 Atomic orbital electron populations 1.69794 1.07844 1.30244 1.31719 1.26068 0.94877 1.01980 0.91853 0.86133 0.80665 0.79405 0.79717 1.19007 1.19724 1.18001 1.19678 0.98341 0.90884 1.37015 0.89270 1.17751 0.92123 0.91054 0.89743 1.20722 0.98632 0.97093 1.00782 1.20327 0.98361 0.92143 0.99462 1.16637 1.01185 0.87325 1.11163 1.21675 0.87014 0.93912 0.92633 1.70454 1.27903 0.98333 1.26245 1.22232 0.95111 0.99301 1.00935 1.22565 1.05788 0.83636 1.10288 1.43395 1.25814 1.08252 1.40482 0.74748 1.20216 0.94647 0.96562 0.96950 1.17346 0.91480 0.94586 1.01823 1.91294 1.53355 1.97304 1.72015 0.90084 0.85406 0.89226 0.82160 0.81558 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.22 10.95 55.55 0.61 -17.61 15 2 C 0.07 1.70 5.15 -17.32 -0.09 1.61 15 3 Si 0.92 17.27 29.59 -169.99 -5.03 12.24 15 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 6 H -0.26 -4.83 7.11 56.52 0.40 -4.42 15 7 C -0.43 -10.90 8.75 -37.95 -0.33 -11.23 15 8 H 0.09 2.22 7.73 -52.49 -0.41 1.81 15 9 C 0.10 2.50 5.57 -106.73 -0.59 1.91 15 10 C -0.15 -3.64 8.61 -39.31 -0.34 -3.98 15 11 C -0.08 -1.78 9.62 -39.59 -0.38 -2.16 15 12 C -0.16 -3.55 5.89 -104.74 -0.62 -4.16 15 13 C 0.31 6.27 7.76 -154.43 -1.20 5.07 15 14 N -0.51 -10.62 10.85 -11.24 -0.12 -10.74 15 15 C -0.03 -0.44 11.84 -17.90 -0.21 -0.65 15 16 C -0.09 -1.30 12.04 -16.45 -0.20 -1.50 15 17 N -0.58 -9.37 6.07 -10.54 -0.06 -9.43 15 18 H 0.42 5.52 8.05 -40.82 -0.33 5.19 15 19 C -0.06 -1.49 9.59 -39.54 -0.38 -1.87 15 20 C -0.03 -0.81 7.25 -39.09 -0.28 -1.09 15 21 F -0.16 -4.03 16.70 2.25 0.04 -3.99 15 22 H 0.29 6.07 8.30 -40.82 -0.34 5.73 15 23 H 0.13 3.05 6.19 -52.49 -0.32 2.73 15 24 H 0.09 1.62 7.14 -52.49 -0.37 1.24 15 25 H 0.16 2.16 8.06 -52.49 -0.42 1.74 15 26 H 0.17 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.12 2.69 7.81 -52.49 -0.41 2.28 15 LS Contribution 248.90 15.07 3.75 3.75 Total: -1.00 -28.10 248.90 -7.27 -35.37 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -1.82 Total: 8.48 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -4.62 Total: -18.06 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.42 Total: -37.79 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.10 -7.27 -35.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242016283.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.432 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds