Wall clock time and date at job start Thu Apr 9 2020 12:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86800 * 119.99522 * 2 1 4 4 H 1.48498 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47289 * 300.00472 * 3 2 1 6 6 H 1.48503 * 109.47157 * 59.99884 * 3 2 1 7 7 C 1.39906 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00132 * 162.90462 * 7 2 1 9 9 C 1.41332 * 119.99682 * 342.90576 * 7 2 1 10 10 C 1.40482 * 120.19772 * 334.67388 * 9 7 2 11 11 C 1.38883 * 119.62966 * 180.23194 * 10 9 7 12 12 C 1.47910 * 119.98455 * 179.72277 * 11 10 9 13 13 N 1.31459 * 125.83043 * 359.69688 * 12 11 10 14 14 C 1.33813 * 109.25246 * 179.89063 * 13 12 11 15 15 C 1.34855 * 108.38302 * 0.36872 * 14 13 12 16 16 N 1.36413 * 125.84040 * 179.97438 * 12 11 10 17 17 H 0.97005 * 126.49716 * 359.94908 * 16 12 11 18 18 C 1.40010 * 120.03477 * 359.52064 * 11 10 9 19 19 C 1.38171 * 120.39737 * 0.45742 * 18 11 10 20 20 C 1.38105 * 120.37276 * 359.79846 * 19 18 11 21 21 F 1.35092 * 120.02158 * 179.97438 * 20 19 18 22 22 H 0.96992 * 120.00337 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.18591 * 359.95605 * 10 9 7 24 24 H 1.07997 * 125.80843 * 180.17870 * 14 13 12 25 25 H 1.08003 * 126.48107 * 179.81479 * 15 14 13 26 26 H 1.07998 * 119.80117 * 180.23595 * 18 11 10 27 27 H 1.08001 * 119.81380 * 179.76814 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3466 -0.0006 5 1 1.8836 2.3966 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0524 -1.2320 -0.2755 9 6 1.3485 -2.4087 0.3587 10 6 0.2213 -2.3703 1.1963 11 6 -0.4150 -3.5542 1.5458 12 6 -1.5987 -3.5235 2.4322 13 7 -2.1395 -2.4462 2.9568 14 6 -3.1942 -2.7995 3.7007 15 6 -3.3191 -4.1413 3.6513 16 7 -2.3126 -4.6085 2.8494 17 1 -2.1399 -5.5353 2.6210 18 6 0.0607 -4.7766 1.0561 19 6 1.1689 -4.8158 0.2317 20 6 1.8176 -3.6491 -0.1221 21 9 2.9008 -3.6957 -0.9281 22 1 -0.4850 0.8399 0.0004 23 1 -0.1456 -1.4258 1.5701 24 1 -3.8343 -2.1251 4.2500 25 1 -4.0715 -4.7349 4.1494 26 1 -0.4394 -5.6946 1.3272 27 1 1.5300 -5.7643 -0.1376 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242018753.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:45 Heat of formation + Delta-G solvation = 22.000004 kcal Electronic energy + Delta-G solvation = -15220.467215 eV Core-core repulsion = 12471.985558 eV Total energy + Delta-G solvation = -2748.481657 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.071 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.28651 -41.34778 -37.30302 -33.89244 -32.02244 -30.74992 -29.81557 -27.36351 -25.42560 -22.12172 -21.75784 -20.51518 -19.64522 -18.13627 -16.76134 -16.09771 -15.29755 -14.60383 -14.45969 -14.19872 -14.02544 -13.47791 -13.23049 -12.89367 -12.58709 -11.88279 -11.71194 -11.42177 -11.13021 -10.96924 -10.55044 -10.13411 -9.69195 -9.58567 -9.41179 -9.31389 -8.46677 -7.70260 -7.03970 -6.81675 -4.47902 1.91741 2.65702 2.88469 3.06600 3.10607 3.13482 3.53574 3.81095 3.89188 4.54337 5.05917 5.40764 5.41205 5.73500 5.78065 5.88968 6.07708 6.25004 6.47158 6.83473 6.91519 7.08238 7.12362 7.34793 7.40220 7.70432 7.77531 7.94409 8.00440 8.40682 8.65056 8.66039 8.71775 10.06471 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.009439 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.762754 B = 2965.793022 C = 4089.087375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.447 4.447 8 H 0.086 0.914 9 C 0.082 3.918 10 C -0.091 4.091 11 C -0.027 4.027 12 C 0.284 3.716 13 N -0.481 5.481 14 C -0.029 4.029 15 C -0.077 4.077 16 N -0.572 5.572 17 H 0.416 0.584 18 C -0.215 4.215 19 C -0.116 4.116 20 C -0.027 4.027 21 F -0.161 7.161 22 H 0.287 0.713 23 H 0.144 0.856 24 H 0.164 0.836 25 H 0.170 0.830 26 H 0.092 0.908 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 -4.838 4.301 7.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.475 4.475 8 H 0.105 0.895 9 C 0.078 3.922 10 C -0.112 4.112 11 C -0.030 4.030 12 C 0.023 3.977 13 N -0.199 5.199 14 C -0.179 4.179 15 C -0.211 4.211 16 N -0.175 5.175 17 H 0.253 0.747 18 C -0.236 4.236 19 C -0.135 4.135 20 C -0.048 4.048 21 F -0.141 7.141 22 H 0.098 0.902 23 H 0.162 0.838 24 H 0.181 0.819 25 H 0.187 0.813 26 H 0.110 0.890 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.904 -3.824 4.191 6.887 hybrid contribution 0.021 -0.689 -0.072 0.693 sum -3.883 -4.513 4.119 7.239 Atomic orbital electron populations 1.69800 1.07560 1.30018 1.32380 1.25969 0.94834 1.01669 0.92213 0.86154 0.80938 0.80353 0.78777 1.18210 1.19778 1.19362 1.19578 0.98243 0.90702 1.38988 0.89548 1.17578 0.92456 0.91219 0.90936 1.21376 0.96033 0.96799 0.97000 1.17436 0.92452 0.94872 0.98219 1.21887 0.95596 0.81138 0.99073 1.70555 1.09504 1.27419 1.12442 1.22309 0.98965 0.92995 1.03593 1.22609 0.97582 0.96834 1.04033 1.43510 1.24699 1.10302 1.39023 0.74681 1.19928 1.01225 0.94793 1.07674 1.20282 0.97000 0.95868 1.00396 1.17910 0.90992 0.94779 1.01085 1.91274 1.53446 1.97321 1.72010 0.90207 0.83798 0.81870 0.81264 0.88958 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.93 10.97 55.55 0.61 -19.32 15 2 C 0.07 1.83 5.15 -17.34 -0.09 1.74 15 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 15 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.45 -11.87 8.77 -37.78 -0.33 -12.20 15 8 H 0.09 2.25 7.74 -52.49 -0.41 1.85 15 9 C 0.08 2.17 5.57 -106.80 -0.59 1.58 15 10 C -0.09 -2.35 8.31 -38.50 -0.32 -2.67 15 11 C -0.03 -0.63 5.87 -105.03 -0.62 -1.25 15 12 C 0.28 5.96 7.77 -154.66 -1.20 4.76 15 13 N -0.48 -10.49 10.86 -11.21 -0.12 -10.61 15 14 C -0.03 -0.49 11.84 -17.89 -0.21 -0.71 15 15 C -0.08 -1.11 12.03 -16.48 -0.20 -1.31 15 16 N -0.57 -9.21 6.08 -10.53 -0.06 -9.27 15 17 H 0.42 5.32 8.06 -40.82 -0.33 4.99 15 18 C -0.22 -4.49 9.70 -38.94 -0.38 -4.87 15 19 C -0.12 -2.55 9.99 -39.65 -0.40 -2.95 15 20 C -0.03 -0.67 7.31 -38.56 -0.28 -0.95 15 21 F -0.16 -4.01 16.71 2.25 0.04 -3.97 15 22 H 0.29 6.72 8.30 -40.82 -0.34 6.38 15 23 H 0.14 3.96 5.96 -52.49 -0.31 3.64 15 24 H 0.16 2.26 8.06 -52.49 -0.42 1.84 15 25 H 0.17 1.67 8.06 -52.48 -0.42 1.25 15 26 H 0.09 1.58 7.15 -52.49 -0.38 1.20 15 27 H 0.10 1.98 8.06 -52.49 -0.42 1.56 15 LS Contribution 249.19 15.07 3.76 3.76 Total: -1.00 -29.51 249.19 -7.26 -36.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -1.83 Total: 7.90 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -4.62 Total: -18.82 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.42 Total: -39.21 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.51 -7.26 -36.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242018753.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.771 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds