Wall clock time and date at job start Thu Apr 9 2020 12:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31495 * 1 3 3 Si 1.86807 * 119.99933 * 2 1 4 4 H 1.48494 * 109.46973 * 270.00181 * 3 2 1 5 5 H 1.48501 * 109.46677 * 30.00141 * 3 2 1 6 6 H 1.48499 * 109.47057 * 149.99858 * 3 2 1 7 7 C 1.38825 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00576 * 180.02562 * 7 2 1 9 9 S 1.76209 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.76204 * 99.99879 * 180.02562 * 9 7 2 11 11 S 1.71202 * 119.99895 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00105 * 179.97438 * 10 9 7 13 13 C 1.47151 * 120.98286 * 359.72293 * 12 10 9 14 14 C 1.53293 * 108.38543 * 129.73405 * 13 12 10 15 15 O 1.42962 * 109.22230 * 52.30787 * 14 13 12 16 16 C 1.42957 * 114.16142 * 297.41398 * 15 14 13 17 17 C 1.47156 * 120.98466 * 180.02562 * 12 10 9 18 18 H 0.97004 * 120.00148 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.68184 * 249.46000 * 13 12 10 20 20 H 1.09003 * 109.67897 * 10.00956 * 13 12 10 21 21 H 1.09001 * 109.51429 * 292.37701 * 14 13 12 22 22 H 1.09002 * 109.55320 * 172.25789 * 14 13 12 23 23 H 1.09004 * 109.51938 * 302.65992 * 16 15 14 24 24 H 1.08999 * 109.55606 * 182.53215 * 16 15 14 25 25 H 1.09002 * 109.67563 * 349.98862 * 17 12 10 26 26 H 1.09000 * 109.67967 * 110.53870 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4403 0.7001 7 6 2.0091 -1.2022 -0.0005 8 1 3.0891 -1.2023 -0.0001 9 16 1.1281 -2.7282 -0.0005 10 6 2.4779 -3.8608 -0.0005 11 16 4.0866 -3.2752 0.0001 12 7 2.2439 -5.1881 0.0000 13 6 0.8700 -5.7150 0.0067 14 6 0.7459 -6.7558 -1.1119 15 8 1.7953 -7.7175 -0.9786 16 6 3.1096 -7.1726 -1.1182 17 6 3.3548 -6.1532 0.0006 18 1 -0.4850 0.8401 0.0004 19 1 0.6611 -6.1832 0.9686 20 1 0.1644 -4.9027 -0.1678 21 1 0.8261 -6.2613 -2.0800 22 1 -0.2190 -7.2573 -1.0382 23 1 3.1984 -6.6795 -2.0863 24 1 3.8458 -7.9733 -1.0487 25 1 4.2948 -5.6309 -0.1779 26 1 3.3956 -6.6653 0.9619 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005376160.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:35 Heat of formation + Delta-G solvation = -52.078023 kcal Electronic energy + Delta-G solvation = -12380.435334 eV Core-core repulsion = 10096.846783 eV Total energy + Delta-G solvation = -2283.588551 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 233.028 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.79341 -37.26193 -34.87195 -32.67651 -30.29978 -27.99409 -25.56555 -25.53550 -21.93005 -20.13793 -18.60125 -18.07372 -17.18286 -17.03949 -16.41493 -16.20126 -15.90915 -15.61516 -14.88335 -13.69040 -13.66658 -13.16948 -13.11425 -13.06674 -12.78433 -12.66951 -12.40954 -11.90302 -11.73355 -11.38299 -10.93482 -10.78201 -9.42286 -8.85362 -8.65084 -8.32152 -6.45720 -0.20515 0.59447 1.20043 1.37083 1.39100 1.52022 1.76160 2.14395 2.75719 2.82381 2.96024 3.59093 3.78823 3.98493 4.09220 4.13062 4.40476 4.61245 4.66000 4.73962 4.81035 5.43164 5.46683 5.60377 5.97439 6.35160 6.89326 8.44088 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.046515 B = 0.007908 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.808511 B = 3539.982067 C = 4031.078481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.044 3.956 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.273 1.273 7 C -0.575 4.575 8 H 0.119 0.881 9 S 0.175 5.825 10 C 0.273 3.727 11 S -0.738 6.738 12 N -0.529 5.529 13 C 0.052 3.948 14 C 0.055 3.945 15 O -0.384 6.384 16 C 0.060 3.940 17 C 0.056 3.944 18 H 0.285 0.715 19 H 0.110 0.890 20 H 0.100 0.900 21 H 0.056 0.944 22 H 0.148 0.852 23 H 0.051 0.949 24 H 0.141 0.859 25 H 0.106 0.894 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -12.664 -1.531 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.165 4.165 3 Si 0.814 3.186 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.198 1.198 7 C -0.725 4.725 8 H 0.136 0.864 9 S 0.412 5.588 10 C -0.093 4.093 11 S -0.607 6.607 12 N -0.235 5.235 13 C -0.073 4.073 14 C -0.023 4.023 15 O -0.302 6.302 16 C -0.018 4.018 17 C -0.069 4.069 18 H 0.094 0.906 19 H 0.128 0.872 20 H 0.118 0.882 21 H 0.074 0.926 22 H 0.165 0.835 23 H 0.069 0.931 24 H 0.158 0.842 25 H 0.124 0.876 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.077 -12.718 -1.492 13.170 hybrid contribution 1.081 1.357 0.066 1.736 sum -1.996 -11.361 -1.426 11.623 Atomic orbital electron populations 1.69963 1.07193 1.30173 1.45156 1.25991 0.95915 1.02727 0.91858 0.85032 0.78290 0.76052 0.79259 1.18903 1.18682 1.19792 1.24692 0.98961 0.90608 1.58219 0.86385 1.82738 1.03710 0.97672 1.74656 1.27971 1.03296 0.91224 0.86817 1.92558 1.09721 1.82442 1.75952 1.47394 1.09459 1.01801 1.64860 1.23166 0.81318 0.99472 1.03345 1.23122 0.93224 0.89909 0.96018 1.87945 1.14687 1.34500 1.93037 1.23060 0.85605 0.97096 0.96034 1.23070 0.91785 0.90100 1.01948 0.90579 0.87205 0.88230 0.92599 0.83457 0.93076 0.84160 0.87561 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.53 13.21 21.64 0.29 -47.24 15 2 C 0.04 2.32 5.49 84.88 0.47 2.78 15 3 Si 0.99 43.27 29.55 68.60 2.03 45.30 15 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.26 -10.56 7.11 99.48 0.71 -9.86 15 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.58 -32.20 9.08 67.96 0.62 -31.59 15 8 H 0.12 7.13 5.45 -6.91 -0.04 7.09 15 9 S 0.17 8.31 19.54 -56.46 -1.10 7.20 15 10 C 0.27 12.24 7.35 129.79 0.95 13.19 15 11 S -0.74 -38.91 25.65 -56.46 -1.45 -40.36 15 12 N -0.53 -17.97 3.02 -699.81 -2.11 -20.08 15 13 C 0.05 1.30 6.54 86.35 0.56 1.86 15 14 C 0.05 1.09 6.98 72.08 0.50 1.59 15 15 O -0.38 -8.43 10.74 -148.98 -1.60 -10.03 15 16 C 0.06 1.31 6.99 72.09 0.50 1.82 15 17 C 0.06 1.61 6.52 86.37 0.56 2.18 15 18 H 0.28 13.98 8.31 -92.71 -0.77 13.21 15 19 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 20 H 0.10 2.67 6.05 -2.54 -0.02 2.66 15 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 15 22 H 0.15 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.05 1.22 8.14 -2.38 -0.02 1.20 15 24 H 0.14 2.20 8.14 -2.39 -0.02 2.18 15 25 H 0.11 3.67 6.05 -2.82 -0.02 3.65 15 26 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -68.94 246.71 1.39 -67.56 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.16 Total: 5.82 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.17 Total: -8.17 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.83 Total: -67.32 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.60 Total: -10.03 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -30.61 SS G_CDS: -2.55 Total: -33.16 kcal Total: -68.94 1.39 -67.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005376160.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.478 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds