Wall clock time and date at job start Thu Apr 9 2020 12:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76193 * 100.00305 * 2 1 4 4 N 1.36408 * 125.52298 * 0.02562 * 3 2 1 5 5 H 0.96996 * 124.75752 * 0.26757 * 4 3 2 6 6 C 1.38546 * 110.48834 * 180.02562 * 4 3 2 7 7 C 1.38977 * 132.57563 * 180.02562 * 6 4 3 8 8 C 1.37966 * 120.01495 * 179.97438 * 7 6 4 9 9 C 1.38651 * 120.62110 * 0.04675 * 8 7 6 10 10 C 1.37874 * 120.23830 * 359.95627 * 9 8 7 11 11 C 1.39327 * 119.69345 * 0.02562 * 10 9 8 12 12 C 1.40227 * 125.52430 * 180.02562 * 3 2 1 13 13 C 1.40639 * 126.93476 * 359.95648 * 12 3 2 14 14 H 1.08001 * 119.99315 * 144.58573 * 13 12 3 15 15 C 1.39464 * 120.00165 * 324.58664 * 13 12 3 16 16 N 1.31328 * 120.00161 * 338.50209 * 15 13 12 17 17 Si 1.86797 * 119.99985 * 158.50196 * 15 13 12 18 18 H 1.48504 * 109.47318 * 94.76435 * 17 15 13 19 19 H 1.48505 * 109.47263 * 214.76432 * 17 15 13 20 20 H 1.48500 * 109.47081 * 334.76782 * 17 15 13 21 21 H 1.09000 * 109.46800 * 300.00280 * 1 2 3 22 22 H 1.08998 * 109.46782 * 59.99569 * 1 2 3 23 23 H 1.08996 * 109.47370 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.99373 * 359.95627 * 7 6 4 25 25 H 1.07995 * 119.68773 * 180.02562 * 8 7 6 26 26 H 1.08003 * 119.88015 * 179.97438 * 9 8 7 27 27 H 1.08007 * 120.15283 * 180.02562 * 10 9 8 28 28 H 0.97000 * 120.00250 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7351 0.0000 4 7 1.1604 2.7085 0.0005 5 1 0.2044 2.5448 0.0046 6 6 1.7468 3.9638 -0.0002 7 6 1.2175 5.2488 0.0003 8 6 2.0592 6.3419 -0.0002 9 6 3.4355 6.1735 -0.0022 10 6 3.9800 4.9068 -0.0029 11 6 3.1406 3.7948 -0.0020 12 6 3.3815 2.3393 -0.0005 13 6 4.6285 1.6890 -0.0003 14 1 5.4597 2.1149 -0.5426 15 6 4.7917 0.4941 0.7003 16 7 3.9684 0.1875 1.6764 17 14 6.1814 -0.6701 0.2503 18 1 7.3525 -0.4043 1.1240 19 1 5.7322 -2.0731 0.4378 20 1 6.5646 -0.4584 -1.1687 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.1470 5.3918 0.0008 25 1 1.6422 7.3381 0.0007 26 1 4.0833 7.0377 -0.0030 27 1 5.0522 4.7772 -0.0040 28 1 4.0816 -0.6437 2.1635 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005527666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:36 Heat of formation + Delta-G solvation = 29.671610 kcal Electronic energy + Delta-G solvation = -13776.248344 eV Core-core repulsion = 11496.593866 eV Total energy + Delta-G solvation = -2279.654478 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 233.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.28859 -37.30450 -35.43576 -32.46098 -30.51492 -29.71244 -29.23571 -26.65996 -23.50979 -22.31174 -21.49772 -19.07750 -17.86901 -17.18613 -16.84636 -16.23290 -15.50697 -15.11435 -14.82037 -14.50440 -14.33782 -14.27406 -14.09178 -13.14911 -13.00694 -12.92796 -12.46976 -12.30137 -12.01326 -11.82705 -11.49308 -11.27601 -10.56392 -10.24925 -9.35368 -8.62088 -8.50060 -7.43698 -5.97051 0.50653 0.98848 1.19248 1.37410 1.44388 1.55949 1.76663 2.18254 2.36603 3.01285 3.09087 3.49022 4.15423 4.25927 4.30457 4.40580 4.50395 4.79451 4.82897 4.94072 4.97191 5.25044 5.38630 5.54335 5.78551 5.90218 5.99333 6.15312 6.53817 6.60538 7.03978 7.10684 7.19583 8.58533 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.011316 C = 0.008024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.592452 B = 2473.749522 C = 3488.704757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 S -0.046 6.046 3 C -0.092 4.092 4 N -0.590 5.590 5 H 0.406 0.594 6 C 0.091 3.909 7 C -0.156 4.156 8 C -0.103 4.103 9 C -0.174 4.174 10 C -0.082 4.082 11 C -0.158 4.158 12 C 0.028 3.972 13 C -0.478 4.478 14 H 0.062 0.938 15 C 0.034 3.966 16 N -0.803 5.803 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.268 1.268 20 H -0.267 1.267 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.117 0.883 24 H 0.134 0.866 25 H 0.154 0.846 26 H 0.142 0.858 27 H 0.107 0.893 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 3.484 -2.135 7.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.343 4.343 2 S 0.192 5.808 3 C -0.307 4.307 4 N -0.199 5.199 5 H 0.243 0.757 6 C -0.021 4.021 7 C -0.178 4.178 8 C -0.122 4.122 9 C -0.193 4.193 10 C -0.101 4.101 11 C -0.166 4.166 12 C 0.016 3.984 13 C -0.510 4.510 14 H 0.080 0.920 15 C -0.180 4.180 16 N -0.431 5.431 17 Si 0.778 3.222 18 H -0.194 1.194 19 H -0.193 1.193 20 H -0.191 1.191 21 H 0.090 0.910 22 H 0.095 0.905 23 H 0.136 0.864 24 H 0.152 0.848 25 H 0.172 0.828 26 H 0.160 0.840 27 H 0.125 0.875 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.359 2.151 -1.960 6.098 hybrid contribution -0.556 0.253 0.081 0.616 sum -5.915 2.403 -1.879 6.656 Atomic orbital electron populations 1.23678 0.98914 1.07349 1.04356 1.85661 1.02586 0.99547 1.93011 1.22232 0.90318 0.91412 1.26770 1.41132 1.06784 1.02918 1.69037 0.75669 1.18618 0.92463 0.86760 1.04272 1.20243 1.00248 0.88594 1.08706 1.21029 0.92845 0.98359 0.99976 1.21009 0.95928 0.95815 1.06597 1.20642 0.98555 0.91876 0.99014 1.19888 0.93431 0.94532 1.08757 1.18077 0.91673 0.88513 1.00152 1.18541 0.96045 1.07054 1.29391 0.91981 1.26176 0.99316 0.98981 0.93548 1.70036 1.35208 1.23219 1.14627 0.85570 0.78994 0.78204 0.79449 1.19384 1.19279 1.19083 0.91022 0.90457 0.86442 0.84767 0.82806 0.84041 0.87535 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.53 9.41 113.37 1.07 -4.47 15 2 S -0.05 -2.06 19.43 -56.49 -1.10 -3.16 15 3 C -0.09 -4.70 6.90 84.47 0.58 -4.12 15 4 N -0.59 -25.91 5.86 -180.69 -1.06 -26.97 15 5 H 0.41 14.73 7.61 -92.71 -0.71 14.02 15 6 C 0.09 4.04 7.23 38.79 0.28 4.32 15 7 C -0.16 -5.54 10.07 22.38 0.23 -5.31 15 8 C -0.10 -3.25 10.02 22.30 0.22 -3.03 15 9 C -0.17 -6.05 10.04 22.28 0.22 -5.83 15 10 C -0.08 -3.60 10.10 22.45 0.23 -3.37 15 11 C -0.16 -8.04 6.31 -20.04 -0.13 -8.16 15 12 C 0.03 1.59 5.71 -19.76 -0.11 1.48 15 13 C -0.48 -27.33 9.25 23.15 0.21 -27.11 15 14 H 0.06 3.52 7.93 -2.91 -0.02 3.50 15 15 C 0.03 1.81 4.50 85.06 0.38 2.20 15 16 N -0.80 -43.57 10.63 21.77 0.23 -43.34 15 17 Si 0.95 41.38 29.61 68.60 2.03 43.41 15 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 21 H 0.07 2.22 8.00 -2.39 -0.02 2.20 15 22 H 0.08 2.25 8.01 -2.40 -0.02 2.23 15 23 H 0.12 3.09 8.14 -2.40 -0.02 3.07 15 24 H 0.13 3.81 8.06 -2.91 -0.02 3.78 15 25 H 0.15 3.48 8.06 -2.91 -0.02 3.46 15 26 H 0.14 3.88 8.06 -2.91 -0.02 3.86 15 27 H 0.11 4.60 8.06 -2.91 -0.02 4.58 15 28 H 0.28 14.09 8.31 -92.71 -0.77 13.32 15 Total: -1.00 -64.91 256.58 3.76 -61.15 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.47 Total: 22.31 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 3.19 Total: -53.40 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -0.83 Total: -70.31 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -1.10 Total: -3.16 kcal Total: -64.91 3.76 -61.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005527666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.820 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds