Wall clock time and date at job start Thu Apr 9 2020 12:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47201 * 300.00335 * 3 2 1 6 6 H 1.48508 * 109.46908 * 60.00162 * 3 2 1 7 7 C 1.39893 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99398 * 193.59367 * 7 2 1 9 9 C 1.41206 * 120.00320 * 13.59362 * 7 2 1 10 10 C 1.40837 * 120.18323 * 206.32183 * 9 7 2 11 11 C 1.36430 * 119.81322 * 180.02562 * 10 9 7 12 12 C 1.39309 * 120.18666 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81905 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00360 * 185.42905 * 13 12 11 15 15 C 1.55237 * 110.58390 * 271.76991 * 14 13 12 16 16 C 1.54888 * 102.58943 * 203.33469 * 15 14 13 17 17 C 1.54268 * 104.30841 * 37.93363 * 16 15 14 18 18 C 1.53873 * 106.60309 * 336.31987 * 17 16 15 19 19 C 1.39314 * 120.36850 * 0.25462 * 12 11 10 20 20 C 1.36445 * 120.17868 * 359.48457 * 19 12 11 21 21 H 0.96999 * 120.00117 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.08503 * 0.02562 * 10 9 7 23 23 H 1.08003 * 119.90570 * 179.97438 * 11 10 9 24 24 H 1.08996 * 110.42996 * 34.35653 * 14 13 12 25 25 H 1.09007 * 110.89218 * 85.04416 * 15 14 13 26 26 H 1.09002 * 110.76452 * 321.57086 * 15 14 13 27 27 H 1.09000 * 110.48575 * 279.18689 * 16 15 14 28 28 H 1.09000 * 110.48625 * 156.67309 * 16 15 14 29 29 H 1.08998 * 110.03394 * 95.60566 * 17 16 15 30 30 H 1.09000 * 110.02949 * 216.99083 * 17 16 15 31 31 H 1.09004 * 110.03041 * 119.27993 * 18 17 16 32 32 H 1.08993 * 110.03538 * 240.67044 * 18 17 16 33 33 H 1.07994 * 119.91201 * 179.72430 * 19 12 11 34 34 H 1.07999 * 120.09458 * 180.25674 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0082 -1.2115 -0.0005 8 1 3.0656 -1.2246 0.2193 9 6 1.3319 -2.4172 -0.2885 10 6 1.8147 -3.6387 0.2198 11 6 1.1556 -4.7991 -0.0636 12 6 0.0078 -4.7781 -0.8528 13 8 -0.6414 -5.9366 -1.1304 14 6 -1.7404 -5.8624 -2.0409 15 6 -3.0578 -5.5493 -1.2818 16 6 -4.1405 -6.0958 -2.2452 17 6 -3.5216 -7.3857 -2.8222 18 6 -1.9955 -7.2374 -2.6923 19 6 -0.4738 -3.5747 -1.3635 20 6 0.1706 -2.4046 -1.0851 21 1 -0.4850 0.8400 0.0004 22 1 2.7041 -3.6566 0.8321 23 1 1.5247 -5.7368 0.3251 24 1 -1.5517 -5.1078 -2.8043 25 1 -3.1767 -4.4756 -1.1361 26 1 -3.0885 -6.0755 -0.3277 27 1 -4.3395 -5.3787 -3.0417 28 1 -5.0567 -6.3230 -1.7001 29 1 -3.8624 -8.2504 -2.2528 30 1 -3.7987 -7.4963 -3.8705 31 1 -1.5958 -8.0301 -2.0598 32 1 -1.5314 -7.2764 -3.6777 33 1 -1.3617 -3.5674 -1.9782 34 1 -0.2063 -1.4720 -1.4783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017043732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:42 Heat of formation + Delta-G solvation = -37.054461 kcal Electronic energy + Delta-G solvation = -15767.031957 eV Core-core repulsion = 13242.990155 eV Total energy + Delta-G solvation = -2524.041803 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23143 -37.24867 -35.53842 -33.23078 -29.67578 -29.25284 -28.53658 -27.47674 -24.71904 -21.56523 -20.95222 -20.33646 -19.44599 -17.42985 -17.12961 -15.63932 -15.22429 -14.79399 -14.18376 -13.92894 -13.36619 -13.24768 -12.88726 -12.46620 -11.98817 -11.87735 -11.62554 -11.28889 -11.15517 -11.05674 -10.95356 -10.80644 -10.62855 -10.45230 -10.26001 -9.74344 -9.68786 -9.29360 -9.00609 -7.61390 -6.93712 -6.66459 -4.23319 2.78814 2.99922 3.10322 3.15756 3.22600 3.98035 4.15509 4.65235 4.73077 4.78473 5.03771 5.48439 5.56928 5.61058 5.69157 5.72781 5.79555 5.94954 6.01484 6.10577 6.16254 6.26645 6.32849 6.41027 6.44386 6.81274 6.94288 7.10690 7.33044 7.46888 7.60085 7.95897 8.04222 8.20090 8.50679 8.70534 8.94276 9.03469 10.27801 Molecular weight = 232.12amu Principal moments of inertia in cm(-1) A = 0.046196 B = 0.005698 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.967076 B = 4912.944637 C = 5349.506859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.084 3.916 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.003 4.003 13 O -0.322 6.322 14 C 0.086 3.914 15 C -0.147 4.147 16 C -0.124 4.124 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.176 4.176 20 C -0.130 4.130 21 H 0.277 0.723 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -7.184 -4.464 10.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.214 4.214 11 C -0.137 4.137 12 C -0.046 4.046 13 O -0.238 6.238 14 C 0.029 3.971 15 C -0.184 4.184 16 C -0.162 4.162 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.195 4.195 20 C -0.149 4.149 21 H 0.088 0.912 22 H 0.117 0.883 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.757 -7.206 -4.379 10.210 hybrid contribution 0.153 1.029 -0.026 1.041 sum -5.604 -6.176 -4.406 9.432 Atomic orbital electron populations 1.69824 1.07421 1.28735 1.37391 1.25860 0.94769 1.01141 0.92534 0.86263 0.80864 0.81136 0.78423 1.18520 1.19883 1.20096 1.19498 0.96613 0.90741 1.42469 0.90575 1.17613 0.92102 0.92220 0.89864 1.20613 1.02543 0.92533 1.05679 1.19619 0.94909 0.97614 1.01544 1.18609 0.96304 0.84016 1.05688 1.85854 1.44513 1.31417 1.61974 1.23051 0.85685 0.97087 0.91283 1.23076 0.94560 1.01700 0.99107 1.22277 0.98057 0.97001 0.98832 1.22069 0.94811 0.98153 1.00748 1.22142 0.95892 0.97259 1.00551 1.20668 1.01262 0.93068 1.04502 1.21020 0.97947 0.96328 0.99624 0.91172 0.88275 0.88610 0.91073 0.90951 0.90719 0.91624 0.91645 0.91748 0.91851 0.90690 0.91447 0.88563 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.18 10.82 55.54 0.60 -20.58 16 2 C 0.07 1.85 5.21 -17.34 -0.09 1.75 16 3 Si 0.91 18.95 29.58 -169.99 -5.03 13.92 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.46 -12.45 9.05 -37.84 -0.34 -12.79 16 8 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 9 C 0.08 2.28 5.57 -106.80 -0.59 1.69 16 10 C -0.19 -4.87 9.74 -39.25 -0.38 -5.25 16 11 C -0.12 -2.81 9.92 -39.83 -0.40 -3.20 16 12 C 0.00 -0.07 6.68 -38.78 -0.26 -0.33 16 13 O -0.32 -6.74 9.84 -18.73 -0.18 -6.93 16 14 C 0.09 1.46 2.68 -24.88 -0.07 1.39 16 15 C -0.15 -2.25 6.37 -24.55 -0.16 -2.40 16 16 C -0.12 -1.47 6.82 -25.07 -0.17 -1.64 16 17 C -0.12 -1.33 6.80 -25.61 -0.17 -1.50 16 18 C -0.12 -1.63 6.56 -25.61 -0.17 -1.79 16 19 C -0.18 -4.21 8.73 -39.83 -0.35 -4.55 16 20 C -0.13 -3.42 8.63 -39.25 -0.34 -3.76 16 21 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 22 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 23 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 24 H 0.07 1.24 6.29 -51.93 -0.33 0.91 16 25 H 0.07 1.18 7.53 -51.93 -0.39 0.79 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.07 5.41 -52.49 -0.28 1.78 16 34 H 0.12 3.33 6.12 -52.49 -0.32 3.01 16 LS Contribution 278.91 15.07 4.20 4.20 Total: -1.00 -28.04 278.91 -8.57 -36.61 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.67 Total: 5.16 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -3.49 Total: -32.39 kcal Atomic # 7 Polarization: -21.18 SS G_CDS: 0.60 Total: -20.58 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.18 Total: -6.93 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.04 -8.57 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017043732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.444 kcal (2) G-P(sol) polarization free energy of solvation -28.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds