Wall clock time and date at job start Thu Apr 9 2020 12:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00497 * 2 1 4 4 H 1.48503 * 109.47145 * 275.24895 * 3 2 1 5 5 H 1.48498 * 109.46867 * 35.24846 * 3 2 1 6 6 H 1.48502 * 109.47001 * 155.24660 * 3 2 1 7 7 C 1.38819 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 24.35655 * 7 2 1 9 9 N 1.36935 * 119.99840 * 204.36306 * 7 2 1 10 10 C 1.46933 * 120.62822 * 231.45662 * 9 7 2 11 11 C 1.53189 * 108.77273 * 233.63342 * 10 9 7 12 12 C 1.53035 * 109.31347 * 305.36197 * 11 10 9 13 13 C 1.53035 * 109.53947 * 61.37127 * 12 11 10 14 14 C 1.46918 * 120.63544 * 51.48302 * 9 7 2 15 15 H 1.08996 * 109.58933 * 246.15732 * 14 9 7 16 16 C 1.50710 * 109.58642 * 6.58007 * 14 9 7 17 17 C 1.38678 * 120.41830 * 230.97639 * 16 14 9 18 18 C 1.38620 * 118.41903 * 179.77841 * 17 16 14 19 19 C 1.38231 * 119.15936 * 0.47250 * 18 17 16 20 20 N 1.31853 * 120.76551 * 359.76802 * 19 18 17 21 21 C 1.31884 * 121.72302 * 0.02562 * 20 19 18 22 22 H 0.97005 * 119.99422 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.58326 * 113.84104 * 10 9 7 24 24 H 1.08997 * 109.70005 * 353.48818 * 10 9 7 25 25 H 1.09010 * 109.49134 * 185.41242 * 11 10 9 26 26 H 1.08999 * 109.52754 * 65.33839 * 11 10 9 27 27 H 1.09001 * 109.46035 * 301.34638 * 12 11 10 28 28 H 1.09007 * 109.45857 * 181.39119 * 12 11 10 29 29 H 1.09000 * 109.50254 * 178.68487 * 13 12 11 30 30 H 1.09003 * 109.52433 * 58.59608 * 13 12 11 31 31 H 1.08003 * 120.78658 * 0.02562 * 17 16 14 32 32 H 1.08000 * 120.42315 * 180.21902 * 18 17 16 33 33 H 1.08005 * 119.61555 * 179.78486 * 19 18 17 34 34 H 1.08005 * 119.61428 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3870 2.1104 -1.3942 5 1 1.5077 2.6180 0.8080 6 1 3.5989 1.4104 0.5862 7 6 2.0102 -1.2022 0.0005 8 1 1.5423 -2.0961 -0.3848 9 7 3.2881 -1.2548 0.4898 10 6 4.3704 -1.8504 -0.3058 11 6 5.0663 -2.9253 0.5350 12 6 5.5245 -2.3130 1.8606 13 6 4.3078 -1.8050 2.6374 14 6 3.6031 -0.7174 1.8204 15 1 4.2596 0.1468 1.7194 16 6 2.3293 -0.3094 2.5149 17 6 2.2092 0.9528 3.0767 18 6 1.0175 1.2862 3.7015 19 6 -0.0006 0.3526 3.7520 20 7 0.1507 -0.8403 3.2110 21 6 1.2687 -1.1903 2.6053 22 1 -0.4849 0.8401 -0.0004 23 1 5.0893 -1.0786 -0.5803 24 1 3.9575 -2.3024 -1.2076 25 1 5.9311 -3.3079 -0.0073 26 1 4.3706 -3.7408 0.7321 27 1 6.2015 -1.4820 1.6620 28 1 6.0420 -3.0696 2.4505 29 1 4.6325 -1.3901 3.5916 30 1 3.6185 -2.6304 2.8152 31 1 3.0234 1.6606 3.0252 32 1 0.8876 2.2615 4.1467 33 1 -0.9310 0.6033 4.2399 34 1 1.3559 -2.1768 2.1742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019228898.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:43 Heat of formation + Delta-G solvation = 40.434462 kcal Electronic energy + Delta-G solvation = -17214.453150 eV Core-core repulsion = 14726.064270 eV Total energy + Delta-G solvation = -2488.388880 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22516 -38.98936 -35.03703 -33.91935 -32.68410 -32.53478 -30.01699 -27.13486 -24.85174 -24.30004 -23.48244 -22.24346 -20.80784 -18.84539 -17.72543 -17.21674 -16.88603 -15.95830 -15.66292 -15.12706 -15.00043 -14.68607 -14.67349 -14.37435 -13.98637 -13.81430 -13.49642 -13.17621 -12.77299 -12.49382 -12.32100 -12.22271 -11.60036 -11.51538 -11.37290 -11.16788 -10.64887 -10.40964 -10.08966 -9.41435 -8.36036 -8.17380 -5.65155 0.47589 0.58268 1.32881 1.40272 1.47633 2.45430 2.99971 3.22307 3.51160 3.76351 4.03650 4.10636 4.14608 4.19705 4.30493 4.39838 4.45363 4.55365 4.70199 4.81259 4.92151 4.97794 5.10882 5.15267 5.21762 5.30393 5.31977 5.36376 5.36868 5.56354 5.70348 5.97638 6.07304 6.33407 7.11665 7.37770 7.65580 8.22316 8.97122 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.014352 C = 0.011729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.863268 B = 1950.481971 C = 2386.603810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.034 3.966 3 Si 0.895 3.105 4 H -0.309 1.309 5 H -0.293 1.293 6 H -0.235 1.235 7 C -0.271 4.271 8 H 0.029 0.971 9 N -0.609 5.609 10 C 0.137 3.863 11 C -0.127 4.127 12 C -0.105 4.105 13 C -0.122 4.122 14 C 0.203 3.797 15 H 0.041 0.959 16 C -0.117 4.117 17 C -0.104 4.104 18 C -0.186 4.186 19 C 0.077 3.923 20 N -0.511 5.511 21 C 0.173 3.827 22 H 0.256 0.744 23 H 0.027 0.973 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.136 0.864 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 0.448 7.322 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.168 4.168 3 Si 0.723 3.277 4 H -0.238 1.238 5 H -0.220 1.220 6 H -0.158 1.158 7 C -0.401 4.401 8 H 0.046 0.954 9 N -0.335 5.335 10 C 0.012 3.988 11 C -0.166 4.166 12 C -0.143 4.143 13 C -0.161 4.161 14 C 0.098 3.902 15 H 0.058 0.942 16 C -0.120 4.120 17 C -0.131 4.131 18 C -0.206 4.206 19 C -0.079 4.079 20 N -0.220 5.220 21 C 0.016 3.984 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.185 0.815 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.777 -0.076 7.373 11.463 hybrid contribution 0.317 1.570 -0.702 1.749 sum 9.094 1.494 6.671 11.377 Atomic orbital electron populations 1.70064 1.07392 1.26696 1.50546 1.26133 0.94975 0.99759 0.95944 0.86615 0.82059 0.82589 0.76441 1.23819 1.22002 1.15829 1.18143 0.89605 0.92324 1.40032 0.95361 1.44385 1.05123 1.71149 1.12864 1.21217 0.89527 0.94256 0.93767 1.21902 0.99895 0.97890 0.96909 1.21395 0.96369 1.00520 0.95994 1.21973 0.97680 0.98144 0.98271 1.19840 0.90764 0.94920 0.84724 0.94170 1.20706 0.98306 0.94778 0.98166 1.21560 0.98720 0.95584 0.97197 1.22191 0.94319 1.01657 1.02418 1.22982 0.99240 0.89229 0.96413 1.67559 1.24139 1.20476 1.09795 1.22003 0.87333 0.98984 0.90125 0.93484 0.95515 0.93086 0.90016 0.93273 0.91812 0.90384 0.90972 0.93085 0.84631 0.82713 0.81477 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.40 13.80 21.65 0.30 -54.10 16 2 C 0.03 1.87 3.41 84.86 0.29 2.16 16 3 Si 0.89 44.30 24.08 68.60 1.65 45.96 16 4 H -0.31 -15.94 7.11 99.48 0.71 -15.24 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.23 -10.65 5.08 99.48 0.51 -10.14 16 7 C -0.27 -14.72 7.20 84.04 0.61 -14.11 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 9 N -0.61 -27.41 2.24 -679.38 -1.53 -28.94 16 10 C 0.14 5.15 6.51 86.36 0.56 5.71 16 11 C -0.13 -3.77 6.08 30.67 0.19 -3.58 16 12 C -0.11 -2.84 5.88 30.62 0.18 -2.66 16 13 C -0.12 -3.92 5.31 30.67 0.16 -3.76 16 14 C 0.20 8.10 1.91 44.23 0.08 8.18 16 15 H 0.04 1.62 6.34 -2.39 -0.02 1.61 16 16 C -0.12 -4.99 2.51 -19.77 -0.05 -5.04 16 17 C -0.10 -4.02 7.06 22.47 0.16 -3.86 16 18 C -0.19 -6.64 10.11 22.36 0.23 -6.42 16 19 C 0.08 3.00 11.18 84.69 0.95 3.95 16 20 N -0.51 -23.45 10.36 -195.84 -2.03 -25.48 16 21 C 0.17 8.09 7.74 84.67 0.66 8.74 16 22 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 23 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 2.00 7.94 -2.39 -0.02 1.98 16 25 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.77 7.79 -2.39 -0.02 1.75 16 31 H 0.14 4.59 7.90 -2.91 -0.02 4.56 16 32 H 0.16 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.17 5.27 8.06 -2.91 -0.02 5.24 16 34 H 0.13 6.34 7.26 -2.91 -0.02 6.32 16 Total: -1.00 -64.21 263.28 3.27 -60.94 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.87 Total: 12.30 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 4.01 Total: -10.68 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -3.26 Total: -108.52 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.65 Total: 45.96 kcal Total: -64.21 3.27 -60.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019228898.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.375 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds