Wall clock time and date at job start Thu Apr 9 2020 12:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00240 * 2 1 4 4 H 1.48498 * 109.46716 * 270.00072 * 3 2 1 5 5 H 1.48503 * 109.46718 * 30.00095 * 3 2 1 6 6 H 1.48499 * 109.46872 * 150.00137 * 3 2 1 7 7 C 1.37885 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00397 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99510 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46858 * 180.02562 * 9 7 2 11 11 O 1.42892 * 109.47448 * 60.00023 * 9 7 2 12 12 C 1.42904 * 113.99807 * 89.99916 * 11 9 7 13 13 C 1.53006 * 109.47299 * 180.02562 * 12 11 9 14 14 C 1.53000 * 117.49776 * 174.99938 * 13 12 11 15 15 C 1.52997 * 117.49537 * 243.62392 * 13 12 11 16 16 C 1.50707 * 109.47295 * 300.00156 * 9 7 2 17 17 C 1.38232 * 119.99869 * 84.72753 * 16 9 7 18 18 C 1.38233 * 119.99714 * 179.81246 * 17 16 9 19 19 C 1.38236 * 120.00502 * 0.39746 * 18 17 16 20 20 C 1.38242 * 119.99393 * 359.85395 * 19 18 17 21 21 C 1.38231 * 120.00058 * 359.96311 * 20 19 18 22 22 H 0.96997 * 119.99256 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47235 * 60.00354 * 12 11 9 24 24 H 1.09003 * 109.47065 * 299.99881 * 12 11 9 25 25 H 1.09002 * 115.56020 * 29.30521 * 13 12 11 26 26 H 1.08990 * 117.49990 * 359.97438 * 14 13 12 27 27 H 1.09004 * 117.49237 * 214.97568 * 14 13 12 28 28 H 1.08999 * 117.49685 * 145.02116 * 15 13 12 29 29 H 1.08999 * 117.52022 * 359.97438 * 15 13 12 30 30 H 1.07997 * 119.99916 * 359.97438 * 17 16 9 31 31 H 1.08007 * 120.00187 * 180.23198 * 18 17 16 32 32 H 1.07993 * 120.00701 * 179.83797 * 19 18 17 33 33 H 1.07998 * 119.99382 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.99813 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 1.9593 -3.3277 -0.0005 11 8 0.4290 -2.5746 -1.1669 12 6 1.0736 -3.1705 -2.2946 13 6 0.1058 -3.1982 -3.4794 14 6 0.6469 -3.6939 -4.8220 15 6 -0.3157 -4.5679 -4.0153 16 6 0.3850 -2.5792 1.2303 17 6 -0.8704 -2.0006 1.2309 18 6 -1.6662 -2.0774 2.3585 19 6 -1.2035 -2.7257 3.4883 20 6 0.0541 -3.2999 3.4894 21 6 0.8484 -3.2263 2.3605 22 1 -0.4849 0.8401 0.0004 23 1 1.3731 -4.1886 -2.0459 24 1 1.9552 -2.5868 -2.5596 25 1 -0.6360 -2.3999 -3.4995 26 1 1.6922 -3.9998 -4.8613 27 1 0.2609 -3.2215 -5.7254 28 1 -1.3348 -4.6706 -4.3881 29 1 0.0966 -5.4494 -3.5243 30 1 -1.2304 -1.4908 0.3495 31 1 -2.6486 -1.6286 2.3578 32 1 -1.8242 -2.7835 4.3702 33 1 0.4157 -3.8060 4.3722 34 1 1.8307 -3.6752 2.3613 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021653.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:25 Heat of formation + Delta-G solvation = 7.648912 kcal Electronic energy + Delta-G solvation = -16115.022320 eV Core-core repulsion = 13592.919001 eV Total energy + Delta-G solvation = -2522.103319 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.25888 -37.28061 -35.56086 -32.66738 -30.41074 -29.58382 -26.98769 -25.78397 -22.75127 -22.07274 -21.31628 -20.25000 -19.83403 -16.77232 -15.81137 -15.55598 -14.98487 -14.58527 -14.09687 -13.75101 -13.49285 -13.17120 -12.70287 -12.29889 -12.03772 -11.51354 -11.37181 -11.28085 -10.97515 -10.83106 -10.60515 -10.24438 -10.12731 -10.03301 -9.84337 -9.42731 -9.15828 -8.70497 -8.03175 -7.69247 -7.38551 -5.91963 -4.25563 2.52696 2.68245 3.26144 3.32911 3.35591 4.15416 4.35275 4.75333 5.08341 5.22176 5.28493 5.31881 5.70761 5.86161 5.87073 5.93864 6.00373 6.12550 6.17005 6.30150 6.37520 6.42458 6.60053 6.63510 6.76261 6.89011 6.96981 7.17699 7.35363 7.56693 7.67457 7.90292 8.09086 8.12895 8.36485 8.59470 9.00323 9.49917 10.92250 Molecular weight = 232.12amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.010750 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.861492 B = 2603.909545 C = 3744.488284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.245 3.755 10 H 0.016 0.984 11 O -0.366 6.366 12 C 0.102 3.898 13 C -0.135 4.135 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.040 4.040 17 C -0.043 4.043 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.131 4.131 22 H 0.261 0.739 23 H 0.025 0.975 24 H 0.044 0.956 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.165 0.835 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -5.492 -2.328 6.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.121 4.121 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.189 3.811 10 H 0.033 0.967 11 O -0.286 6.286 12 C 0.025 3.975 13 C -0.153 4.153 14 C -0.221 4.221 15 C -0.221 4.221 16 C -0.041 4.041 17 C -0.062 4.062 18 C -0.173 4.173 19 C -0.165 4.165 20 C -0.169 4.169 21 C -0.149 4.149 22 H 0.072 0.928 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.182 0.818 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.354 -5.291 -2.333 5.939 hybrid contribution 0.815 0.996 0.216 1.304 sum -0.539 -4.295 -2.117 4.819 Atomic orbital electron populations 1.69824 1.05783 1.25849 1.46799 1.24978 0.94748 0.99053 0.93323 0.86637 0.80035 0.83379 0.78194 1.20460 1.21019 1.19892 1.21440 0.92891 0.90939 1.52876 0.92246 1.18533 0.86953 0.94530 0.81054 0.96653 1.87998 1.40209 1.80938 1.19429 1.21607 0.94022 0.95089 0.86814 1.22238 1.02152 0.97413 0.93510 1.22907 0.99175 1.04773 0.95212 1.22998 0.99434 0.95060 1.04631 1.20014 0.94374 0.94220 0.95494 1.21875 0.92765 0.92292 0.99287 1.21158 0.99660 1.01713 0.94789 1.20811 0.96425 1.01431 0.97842 1.20690 0.95390 1.03151 0.97651 1.20792 0.98932 1.01327 0.93841 0.92825 0.95741 0.93754 0.87127 0.89140 0.89145 0.89295 0.89157 0.81822 0.88075 0.88331 0.88068 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.91 8.50 55.43 0.47 -22.43 16 2 C 0.08 2.27 5.24 -17.82 -0.09 2.18 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.69 8.89 -34.44 -0.31 -14.99 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.25 6.17 2.59 -29.03 -0.08 6.09 16 10 H 0.02 0.37 7.70 -51.93 -0.40 -0.03 16 11 O -0.37 -9.04 8.53 -35.23 -0.30 -9.34 16 12 C 0.10 2.09 6.02 37.16 0.22 2.32 16 13 C -0.13 -2.37 6.06 -90.62 -0.55 -2.92 16 14 C -0.18 -2.58 10.25 -26.73 -0.27 -2.85 16 15 C -0.18 -2.66 10.18 -26.73 -0.27 -2.93 16 16 C -0.04 -0.99 4.80 -104.62 -0.50 -1.49 16 17 C -0.04 -1.06 7.46 -39.59 -0.30 -1.35 16 18 C -0.15 -3.33 10.05 -39.58 -0.40 -3.73 16 19 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 20 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 21 C -0.13 -2.88 9.68 -39.58 -0.38 -3.26 16 22 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 23 H 0.02 0.47 7.82 -51.93 -0.41 0.06 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.25 8.03 -51.93 -0.42 0.84 16 30 H 0.16 4.31 5.50 -52.49 -0.29 4.02 16 31 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 32 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 287.31 15.07 4.33 4.33 Total: -1.00 -27.90 287.31 -9.10 -37.00 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.86 Total: 4.23 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -3.72 Total: -29.66 kcal Atomic # 7 Polarization: -22.91 SS G_CDS: 0.47 Total: -22.43 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.30 Total: -9.34 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.90 -9.10 -37.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021653.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.650 kcal (2) G-P(sol) polarization free energy of solvation -27.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds