Wall clock time and date at job start Thu Apr 9 2020 12:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31004 * 119.99728 * 2 1 4 4 C 1.50701 * 119.99728 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46878 * 134.99713 * 4 3 2 6 6 C 1.42899 * 113.99629 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47377 * 330.00266 * 6 5 4 8 8 C 1.50698 * 109.47418 * 90.00093 * 6 5 4 9 9 H 1.07996 * 120.00302 * 240.00035 * 8 6 5 10 10 C 1.37878 * 119.99803 * 59.99700 * 8 6 5 11 11 N 1.31513 * 119.99919 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 119.99868 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47153 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46756 * 120.00258 * 12 10 8 15 15 H 1.48498 * 109.47134 * 239.99641 * 12 10 8 16 16 C 1.50706 * 109.47222 * 209.99898 * 6 5 4 17 17 C 1.38239 * 119.99629 * 324.73370 * 16 6 5 18 18 C 1.38232 * 119.99416 * 179.78585 * 17 16 6 19 19 C 1.38244 * 120.00463 * 0.43547 * 18 17 16 20 20 C 1.38235 * 119.99652 * 359.81397 * 19 18 17 21 21 C 1.38233 * 120.00058 * 144.99651 * 16 6 5 22 22 H 1.08996 * 109.46986 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47081 * 300.00044 * 1 2 3 24 24 H 1.09001 * 109.47149 * 60.00187 * 1 2 3 25 25 H 1.07994 * 119.99931 * 179.97438 * 2 1 3 26 26 H 1.07993 * 120.00120 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47060 * 254.99843 * 4 3 2 28 28 H 1.09001 * 109.47380 * 14.99931 * 4 3 2 29 29 H 0.97006 * 119.99845 * 180.02562 * 11 10 8 30 30 H 1.07996 * 120.00135 * 359.97438 * 17 16 6 31 31 H 1.08000 * 119.99846 * 180.26713 * 18 17 16 32 32 H 1.07990 * 120.00092 * 179.83476 * 19 18 17 33 33 H 1.07998 * 120.00100 * 179.97438 * 20 19 18 34 34 H 1.08005 * 120.00226 * 359.97438 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1346 0.0000 4 6 3.6690 1.1346 -0.0006 5 8 4.1449 2.0874 -0.9533 6 6 5.5694 2.1676 -1.0332 7 1 6.0021 1.9239 -0.0629 8 6 6.0704 1.1912 -2.0660 9 1 6.7536 0.4053 -1.7796 10 6 5.6566 1.3011 -3.3766 11 7 4.8250 2.2584 -3.7254 12 14 6.2771 0.0904 -4.6566 13 1 7.1947 -0.8836 -4.0129 14 1 5.1255 -0.6340 -5.2519 15 1 7.0036 0.8260 -5.7226 16 6 5.9726 3.5655 -1.4263 17 6 5.1892 4.2893 -2.3057 18 6 5.5567 5.5731 -2.6628 19 6 6.7124 6.1299 -2.1476 20 6 7.4985 5.4042 -1.2722 21 6 7.1287 4.1219 -0.9117 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0470 -0.9353 0.0004 26 1 1.6220 2.0698 -0.0004 27 1 4.0327 1.4003 0.9920 28 1 4.0323 0.1420 -0.2669 29 1 4.5335 2.3355 -4.6474 30 1 4.2884 3.8529 -2.7113 31 1 4.9424 6.1402 -3.3464 32 1 7.0009 7.1319 -2.4286 33 1 8.4016 5.8389 -0.8700 34 1 7.7428 3.5550 -0.2277 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055022199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:29 Heat of formation + Delta-G solvation = -3.131498 kcal Electronic energy + Delta-G solvation = -15952.662642 eV Core-core repulsion = 13430.091850 eV Total energy + Delta-G solvation = -2522.570793 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.23280 -36.55801 -34.51966 -32.64223 -30.46302 -29.60880 -28.33284 -26.60867 -23.49489 -22.56640 -21.25937 -20.12910 -18.99111 -16.71015 -15.83013 -15.31166 -14.63063 -14.45031 -14.07338 -13.68935 -13.38715 -13.01421 -12.74465 -12.63606 -12.19229 -12.02150 -11.53158 -11.38170 -11.14154 -10.96852 -10.69787 -10.53159 -10.15163 -10.06257 -9.77301 -9.20801 -8.71874 -8.60455 -8.01960 -7.69799 -7.39049 -5.92230 -4.25808 2.51312 2.65304 2.68139 3.25220 3.33260 3.35987 4.35121 4.91349 5.09723 5.26725 5.45621 5.63311 5.79858 5.84932 5.85851 5.99641 6.07297 6.16063 6.19411 6.25609 6.42847 6.51676 6.64463 6.86377 6.95740 7.10671 7.17064 7.29601 7.35952 7.56228 7.67336 7.89812 8.08335 8.12318 8.35928 8.58333 8.98961 9.49683 10.92005 Molecular weight = 232.12amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.009634 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.083095 B = 2905.569386 C = 3888.237866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.180 4.180 3 C -0.129 4.129 4 C 0.096 3.904 5 O -0.365 6.365 6 C 0.244 3.756 7 H 0.017 0.983 8 C -0.544 4.544 9 H 0.060 0.940 10 C 0.084 3.916 11 N -0.846 5.846 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.041 4.041 17 C -0.044 4.044 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.130 4.130 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.261 0.739 30 H 0.165 0.835 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 0.773 4.912 5.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.198 4.198 3 C -0.148 4.148 4 C 0.019 3.981 5 O -0.285 6.285 6 C 0.188 3.812 7 H 0.034 0.966 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.121 4.121 11 N -0.482 5.482 12 Si 0.717 3.283 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.042 4.042 17 C -0.063 4.063 18 C -0.173 4.173 19 C -0.165 4.165 20 C -0.169 4.169 21 C -0.148 4.148 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.182 0.818 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.286 0.944 4.635 5.759 hybrid contribution 0.760 -0.770 -0.817 1.355 sum -2.526 0.174 3.818 4.581 Atomic orbital electron populations 1.20768 0.93533 1.01592 1.01550 1.22667 0.95678 0.97983 1.03441 1.22762 0.95857 0.97922 0.98216 1.21128 0.90634 0.94437 0.91884 1.88039 1.23847 1.58154 1.58446 1.18562 0.78934 0.89865 0.93829 0.96552 1.21470 1.29158 1.13651 0.93850 0.92176 1.24982 0.94058 0.94835 0.98269 1.69831 1.31061 1.29699 1.17564 0.86583 0.78763 0.81343 0.81577 1.19737 1.20765 1.20844 1.20018 0.93840 0.94512 0.95790 1.21880 1.01983 0.90349 0.92056 1.21157 0.97537 0.96852 1.01759 1.20813 0.96668 0.98991 1.00028 1.20692 0.99784 0.95466 1.00944 1.20791 0.97550 0.95072 1.01425 0.92605 0.92293 0.91956 0.87700 0.87489 0.94855 0.93632 0.92875 0.81827 0.88072 0.88323 0.88053 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 10.17 36.01 0.37 -1.12 16 2 C -0.18 -2.82 9.86 -36.03 -0.36 -3.17 16 3 C -0.13 -2.32 9.53 -36.03 -0.34 -2.67 16 4 C 0.10 1.98 6.15 36.01 0.22 2.20 16 5 O -0.37 -9.06 8.52 -35.23 -0.30 -9.36 16 6 C 0.24 6.14 2.59 -29.03 -0.08 6.07 16 7 H 0.02 0.39 7.70 -51.93 -0.40 -0.01 16 8 C -0.54 -14.73 8.89 -34.44 -0.31 -15.03 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.08 2.27 5.24 -17.82 -0.09 2.18 16 11 N -0.85 -23.03 8.50 55.43 0.47 -22.56 16 12 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 C -0.04 -1.01 4.80 -104.62 -0.50 -1.51 16 17 C -0.04 -1.07 7.46 -39.58 -0.30 -1.37 16 18 C -0.15 -3.33 10.05 -39.58 -0.40 -3.72 16 19 C -0.15 -2.91 10.05 -39.58 -0.40 -3.30 16 20 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 21 C -0.13 -2.86 9.68 -39.58 -0.38 -3.24 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.10 1.60 7.90 -52.49 -0.41 1.19 16 26 H 0.11 1.87 8.05 -52.49 -0.42 1.45 16 27 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.16 4.33 5.50 -52.49 -0.29 4.04 16 31 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 290.25 15.07 4.37 4.37 Total: -1.00 -28.25 290.25 -8.29 -36.54 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.86 Total: 3.11 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -2.96 Total: -28.08 kcal Atomic # 7 Polarization: -23.03 SS G_CDS: 0.47 Total: -22.56 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.30 Total: -9.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.25 -8.29 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055022199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.407 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds