Wall clock time and date at job start Thu Apr 9 2020 12:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46722 * 2 1 4 4 C 1.50703 * 109.46819 * 240.01175 * 2 1 3 5 5 H 1.08002 * 119.99461 * 239.99931 * 4 2 1 6 6 C 1.37874 * 120.00411 * 59.99753 * 4 2 1 7 7 N 1.31514 * 119.99926 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99980 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47345 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47415 * 119.99849 * 8 6 4 11 11 H 1.48494 * 109.46988 * 239.99703 * 8 6 4 12 12 N 1.46496 * 109.47357 * 120.00806 * 2 1 3 13 13 S 1.65594 * 119.99885 * 264.99810 * 12 2 1 14 14 O 1.42106 * 104.28088 * 308.93088 * 13 12 2 15 15 O 1.42104 * 104.28020 * 181.07290 * 13 12 2 16 16 C 1.81404 * 104.44971 * 64.99878 * 13 12 2 17 17 C 1.53786 * 113.61427 * 179.97438 * 16 13 12 18 18 C 1.53781 * 87.17350 * 220.06370 * 17 16 13 19 19 C 1.53782 * 87.08260 * 25.39213 * 18 17 16 20 20 H 1.08998 * 109.46646 * 299.99019 * 1 2 3 21 21 H 1.08998 * 109.47307 * 59.99215 * 1 2 3 22 22 H 1.08994 * 109.46626 * 179.97438 * 1 2 3 23 23 H 0.96998 * 120.00067 * 179.97438 * 7 6 4 24 24 H 0.96994 * 119.99812 * 84.99787 * 12 2 1 25 25 H 1.08993 * 112.90848 * 311.25019 * 16 13 12 26 26 H 1.09002 * 113.61357 * 105.47287 * 17 16 13 27 27 H 1.09002 * 113.61608 * 334.65449 * 17 16 13 28 28 H 1.09001 * 113.61695 * 139.93969 * 18 17 16 29 29 H 1.08997 * 113.61223 * 270.84552 * 18 17 16 30 30 H 1.08997 * 113.61668 * 89.11298 * 19 18 17 31 31 H 1.08998 * 113.61674 * 219.93807 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.6532 -1.5883 -1.1317 6 6 1.6992 -0.2390 -2.4828 7 7 0.9427 0.8300 -2.6033 8 14 2.3213 -1.1198 -4.0082 9 1 3.1464 -2.2865 -3.6042 10 1 1.1660 -1.5860 -4.8163 11 1 3.1464 -0.1867 -4.8166 12 7 2.0184 -0.6907 1.1960 13 16 2.4123 0.1769 2.5504 14 8 3.2876 1.1905 2.0751 15 8 2.8609 -0.8033 3.4764 16 6 0.8409 0.8986 3.0985 17 6 0.9678 1.7611 4.3654 18 6 -0.3630 1.1439 4.8269 19 6 -0.0216 -0.0627 3.9366 20 1 -0.3632 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3632 -1.0276 -0.0005 23 1 0.7086 1.1618 -3.4842 24 1 2.1110 -1.6562 1.1946 25 1 0.2932 1.3854 2.2916 26 1 0.9086 2.8322 4.1721 27 1 1.8159 1.4908 4.9945 28 1 -0.3893 0.9080 5.8907 29 1 -1.2402 1.6982 4.4933 30 1 0.5562 -0.8328 4.4476 31 1 -0.8798 -0.4648 3.3983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717742443.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:05 Heat of formation + Delta-G solvation = -82.959494 kcal Electronic energy + Delta-G solvation = -15247.789833 eV Core-core repulsion = 12655.942385 eV Total energy + Delta-G solvation = -2591.847448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.45529 -38.11723 -37.23504 -36.94258 -34.11683 -30.09869 -27.57581 -26.93237 -26.68631 -22.79120 -21.14784 -19.94157 -19.20488 -18.36551 -17.58386 -17.17527 -16.51796 -16.24736 -15.38663 -14.73777 -14.46643 -14.01557 -13.64240 -13.54211 -13.46086 -13.29163 -13.07406 -13.04298 -12.90073 -12.77993 -12.39020 -12.21581 -11.99509 -11.55512 -11.50054 -11.14395 -11.04787 -10.57949 -9.97379 -8.16294 -6.29529 -0.55948 1.41946 1.44549 1.55336 1.91707 2.43036 2.87981 3.03370 3.13624 3.35167 3.69176 3.76368 3.87375 4.51570 4.55823 4.59766 4.74391 4.91491 4.96523 5.00593 5.05132 5.07012 5.16703 5.40653 5.58256 5.78664 6.05443 6.15089 6.43524 6.81266 7.39775 8.89239 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.043386 B = 0.007792 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.210145 B = 3592.634331 C = 3860.745165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.268 3.732 3 H 0.018 0.982 4 C -0.544 4.544 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.274 1.274 11 H -0.283 1.283 12 N -1.106 6.106 13 S 2.606 3.394 14 O -1.012 7.012 15 O -0.993 6.993 16 C -0.612 4.612 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.113 4.113 20 H 0.047 0.953 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.266 0.734 24 H 0.412 0.588 25 H 0.158 0.842 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 -0.023 12.082 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.035 0.965 4 C -0.583 4.583 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.551 5.551 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.209 1.209 12 N -0.864 5.864 13 S 2.704 3.296 14 O -1.002 7.002 15 O -0.984 6.984 16 C -0.725 4.725 17 C -0.161 4.161 18 C -0.151 4.151 19 C -0.151 4.151 20 H 0.066 0.934 21 H 0.088 0.912 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.245 0.755 25 H 0.176 0.824 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.645 0.360 12.287 13.140 hybrid contribution -0.003 -0.550 -1.399 1.503 sum -4.648 -0.191 10.888 11.840 Atomic orbital electron populations 1.22209 0.96964 1.00643 1.01210 1.18333 0.91847 0.91508 0.82056 0.96459 1.21641 1.31950 1.13288 0.91437 0.92238 1.25665 0.95115 0.95755 1.01781 1.69968 1.37063 1.23611 1.24500 0.85458 0.78242 0.78512 0.79111 1.19470 1.19940 1.20857 1.55322 1.84223 1.19213 1.27658 1.04728 0.77934 0.73974 0.72932 1.93506 1.64388 1.62274 1.80044 1.93488 1.81223 1.59295 1.64382 1.32049 1.19854 1.11999 1.08639 1.22802 1.01060 1.00548 0.91712 1.22759 0.96403 0.95264 1.00712 1.22781 0.99278 0.96507 0.96562 0.93426 0.91249 0.93874 0.92470 0.75472 0.82396 0.88338 0.88961 0.88527 0.88058 0.88335 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.52 9.26 71.98 0.67 -5.85 16 2 C 0.27 13.07 2.80 44.25 0.12 13.20 16 3 H 0.02 0.96 7.48 -2.38 -0.02 0.94 16 4 C -0.54 -29.44 8.76 25.60 0.22 -29.22 16 5 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.91 -50.49 11.32 21.45 0.24 -50.25 16 8 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 N -1.11 -45.63 5.35 -172.51 -0.92 -46.55 16 13 S 2.61 98.03 5.41 -56.49 -0.31 97.72 16 14 O -1.01 -47.41 17.39 -127.65 -2.22 -49.63 16 15 O -0.99 -38.90 17.26 -127.65 -2.20 -41.11 16 16 C -0.61 -16.72 3.92 31.18 0.12 -16.60 16 17 C -0.12 -2.62 7.66 31.12 0.24 -2.39 16 18 C -0.11 -1.89 8.08 31.12 0.25 -1.64 16 19 C -0.11 -2.43 7.65 31.18 0.24 -2.20 16 20 H 0.05 1.66 5.49 -2.39 -0.01 1.65 16 21 H 0.07 3.38 6.07 -2.39 -0.01 3.37 16 22 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 24 H 0.41 15.78 8.79 -96.75 -0.85 14.93 16 25 H 0.16 4.34 6.09 -2.39 -0.01 4.33 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 1.89 8.10 -2.39 -0.02 1.87 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 2.15 7.43 -2.39 -0.02 2.14 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -67.85 267.30 -0.79 -68.63 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.28 Total: 19.63 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 2.31 Total: -43.33 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -0.68 Total: -96.80 kcal Atomic # 8 Polarization: -86.31 SS G_CDS: -4.42 Total: -90.74 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 98.03 SS G_CDS: -0.31 Total: 97.72 kcal Total: -67.85 -0.79 -68.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717742443.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.325 kcal (2) G-P(sol) polarization free energy of solvation -67.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds