Wall clock time and date at job start Thu Apr 9 2020 12:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46733 * 2 1 4 4 C 1.50698 * 109.47065 * 119.99165 * 2 1 3 5 5 H 1.08001 * 120.00154 * 120.00487 * 4 2 1 6 6 C 1.37880 * 120.00120 * 300.00642 * 4 2 1 7 7 N 1.31514 * 120.00275 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99924 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46794 * 59.99961 * 8 6 4 10 10 H 1.48502 * 109.46979 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47164 * 299.99788 * 8 6 4 12 12 N 1.46496 * 109.47445 * 239.99410 * 2 1 3 13 13 S 1.65594 * 119.99885 * 94.99807 * 12 2 1 14 14 O 1.42106 * 104.28088 * 308.93088 * 13 12 2 15 15 O 1.42104 * 104.28020 * 181.07290 * 13 12 2 16 16 C 1.81404 * 104.44971 * 64.99878 * 13 12 2 17 17 C 1.53786 * 113.61427 * 179.97438 * 16 13 12 18 18 C 1.53781 * 87.17350 * 220.06370 * 17 16 13 19 19 C 1.53782 * 87.08260 * 25.39213 * 18 17 16 20 20 H 1.08998 * 109.47498 * 300.00579 * 1 2 3 21 21 H 1.08997 * 109.46966 * 60.01049 * 1 2 3 22 22 H 1.09001 * 109.46566 * 180.02562 * 1 2 3 23 23 H 0.96994 * 120.00364 * 180.02562 * 7 6 4 24 24 H 0.96994 * 119.99812 * 274.99785 * 12 2 1 25 25 H 1.08993 * 112.90848 * 311.25019 * 16 13 12 26 26 H 1.09002 * 113.61357 * 105.47287 * 17 16 13 27 27 H 1.09002 * 113.61608 * 334.65449 * 17 16 13 28 28 H 1.09001 * 113.61695 * 139.93969 * 18 17 16 29 29 H 1.08997 * 113.61223 * 270.84552 * 18 17 16 30 30 H 1.08997 * 113.61668 * 89.11298 * 19 18 17 31 31 H 1.08998 * 113.61674 * 219.93807 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3213 -1.1199 4.0082 9 1 3.8062 -1.1204 4.0084 10 1 1.8268 -0.4194 5.2206 11 1 1.8258 -2.5198 4.0081 12 7 2.0184 -0.6907 -1.1960 13 16 2.4123 0.1769 -2.5504 14 8 1.2752 0.9964 -2.7847 15 8 2.8124 -0.8078 -3.4935 16 6 3.8313 1.1872 -2.0440 17 6 4.3756 2.0900 -3.1637 18 6 5.7848 1.7372 -2.6590 19 6 5.1755 0.4388 -2.1040 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3632 -1.0277 0.0005 23 1 0.7093 1.1621 3.4843 24 1 2.1111 -1.6562 -1.1946 25 1 3.6650 1.7107 -1.1026 26 1 4.1183 3.1420 -3.0402 27 1 4.1649 1.7176 -4.1662 28 1 6.5068 1.5735 -3.4589 29 1 6.1533 2.4117 -1.8862 30 1 5.1829 -0.3862 -2.8162 31 1 5.5649 0.1571 -1.1257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717742446.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:07 Heat of formation + Delta-G solvation = -61.688666 kcal Electronic energy + Delta-G solvation = -15243.297406 eV Core-core repulsion = 12652.372330 eV Total energy + Delta-G solvation = -2590.925076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.36137 -36.51489 -35.46004 -35.26609 -32.18862 -28.23428 -26.10069 -25.68539 -25.21226 -20.93435 -20.01548 -18.45122 -17.53568 -16.71127 -16.06081 -15.50450 -15.16861 -14.62830 -13.70462 -13.32208 -12.66664 -12.58801 -12.37020 -12.21528 -11.94887 -11.65345 -11.56067 -11.43608 -11.13695 -10.98352 -10.62897 -10.57403 -10.49196 -10.26400 -10.11961 -9.83739 -9.13554 -8.61568 -8.23030 -6.15318 -4.24128 0.93028 3.23451 3.29085 3.30128 3.45696 4.21792 4.28969 4.34385 4.52322 4.72207 4.89730 5.14470 5.16150 5.54956 5.65770 5.72895 5.82857 5.99293 6.05886 6.34539 6.37107 6.85055 7.09771 7.12773 7.58199 7.71712 7.85398 8.04166 8.28586 8.80002 9.42619 10.90063 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.008874 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.896160 B = 3154.370043 C = 3583.748457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.275 3.725 3 H 0.037 0.963 4 C -0.527 4.527 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -1.102 6.102 13 S 2.611 3.389 14 O -0.964 6.964 15 O -0.982 6.982 16 C -0.623 4.623 17 C -0.114 4.114 18 C -0.129 4.129 19 C -0.109 4.109 20 H 0.090 0.910 21 H 0.026 0.974 22 H 0.031 0.969 23 H 0.265 0.735 24 H 0.407 0.593 25 H 0.154 0.846 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.338 1.347 -6.994 10.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.171 3.829 3 H 0.055 0.945 4 C -0.567 4.567 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.862 5.862 13 S 2.704 3.296 14 O -0.954 6.954 15 O -0.972 6.972 16 C -0.731 4.731 17 C -0.153 4.153 18 C -0.167 4.167 19 C -0.147 4.147 20 H 0.108 0.892 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.240 0.760 25 H 0.172 0.828 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.773 1.648 -7.675 10.368 hybrid contribution 0.680 -0.575 1.572 1.807 sum 7.453 1.072 -6.103 9.692 Atomic orbital electron populations 1.22227 0.98189 0.99906 1.01429 1.18474 0.91544 0.91823 0.81082 0.94516 1.21286 1.32059 1.13279 0.90062 0.91806 1.24937 0.94848 0.95019 0.99093 1.69872 1.35968 1.22576 1.24049 0.86534 0.79101 0.79757 0.81853 1.20224 1.21191 1.20148 1.55530 1.81077 1.18392 1.31192 1.04711 0.76001 0.75060 0.73850 1.93565 1.45844 1.71354 1.84629 1.93513 1.84903 1.57658 1.61122 1.32023 1.17315 1.13635 1.10154 1.22547 0.97112 0.99933 0.95706 1.22755 0.95702 0.97532 1.00691 1.22583 0.91801 0.97085 1.03249 0.89165 0.95469 0.94994 0.92497 0.75963 0.82761 0.89760 0.89636 0.90983 0.89577 0.88531 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.29 37.16 0.35 -3.54 16 2 C 0.28 6.60 2.66 -69.08 -0.18 6.42 16 3 H 0.04 0.91 7.14 -51.93 -0.37 0.54 16 4 C -0.53 -13.49 8.76 -34.44 -0.30 -13.79 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -1.10 -22.46 5.35 -5.88 -0.03 -22.49 16 13 S 2.61 48.76 5.35 -107.50 -0.58 48.19 16 14 O -0.96 -21.12 17.11 -57.54 -0.98 -22.10 16 15 O -0.98 -19.30 17.26 -57.54 -0.99 -20.30 16 16 C -0.62 -9.55 4.31 -25.82 -0.11 -9.67 16 17 C -0.11 -1.45 7.66 -25.92 -0.20 -1.65 16 18 C -0.13 -1.45 8.08 -25.92 -0.21 -1.66 16 19 C -0.11 -1.46 7.65 -25.82 -0.20 -1.66 16 20 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 21 H 0.03 0.64 7.42 -51.93 -0.39 0.25 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.41 7.71 8.79 -34.47 -0.30 7.40 16 25 H 0.15 2.44 7.42 -51.93 -0.39 2.05 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.27 7.43 -51.93 -0.39 0.88 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 270.19 15.07 4.07 4.07 Total: -1.00 -30.50 270.19 -8.08 -38.58 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.22 Total: 6.24 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -0.95 Total: -23.97 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.60 Total: -45.90 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.98 Total: -42.40 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 48.76 SS G_CDS: -0.58 Total: 48.19 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.50 -8.08 -38.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717742446.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.108 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds