Wall clock time and date at job start Thu Apr 9 2020 12:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46733 * 2 1 4 4 C 1.50698 * 109.47065 * 119.99165 * 2 1 3 5 5 H 1.08001 * 120.00154 * 120.00487 * 4 2 1 6 6 C 1.37880 * 120.00120 * 300.00642 * 4 2 1 7 7 N 1.31514 * 120.00275 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99924 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46794 * 59.99961 * 8 6 4 10 10 H 1.48502 * 109.46979 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47164 * 299.99788 * 8 6 4 12 12 N 1.46496 * 109.47445 * 239.99410 * 2 1 3 13 13 S 1.65594 * 119.99885 * 94.99807 * 12 2 1 14 14 O 1.42106 * 104.28088 * 308.93088 * 13 12 2 15 15 O 1.42104 * 104.28020 * 181.07290 * 13 12 2 16 16 C 1.81404 * 104.44971 * 64.99878 * 13 12 2 17 17 C 1.53786 * 113.61427 * 179.97438 * 16 13 12 18 18 C 1.53781 * 87.17350 * 220.06370 * 17 16 13 19 19 C 1.53782 * 87.08260 * 25.39213 * 18 17 16 20 20 H 1.08998 * 109.47498 * 300.00579 * 1 2 3 21 21 H 1.08997 * 109.46966 * 60.01049 * 1 2 3 22 22 H 1.09001 * 109.46566 * 180.02562 * 1 2 3 23 23 H 0.96994 * 120.00364 * 180.02562 * 7 6 4 24 24 H 0.96994 * 119.99812 * 274.99785 * 12 2 1 25 25 H 1.08993 * 112.90848 * 311.25019 * 16 13 12 26 26 H 1.09002 * 113.61357 * 105.47287 * 17 16 13 27 27 H 1.09002 * 113.61608 * 334.65449 * 17 16 13 28 28 H 1.09001 * 113.61695 * 139.93969 * 18 17 16 29 29 H 1.08997 * 113.61223 * 270.84552 * 18 17 16 30 30 H 1.08997 * 113.61668 * 89.11298 * 19 18 17 31 31 H 1.08998 * 113.61674 * 219.93807 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3213 -1.1199 4.0082 9 1 3.8062 -1.1204 4.0084 10 1 1.8268 -0.4194 5.2206 11 1 1.8258 -2.5198 4.0081 12 7 2.0184 -0.6907 -1.1960 13 16 2.4123 0.1769 -2.5504 14 8 1.2752 0.9964 -2.7847 15 8 2.8124 -0.8078 -3.4935 16 6 3.8313 1.1872 -2.0440 17 6 4.3756 2.0900 -3.1637 18 6 5.7848 1.7372 -2.6590 19 6 5.1755 0.4388 -2.1040 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3632 -1.0277 0.0005 23 1 0.7093 1.1621 3.4843 24 1 2.1111 -1.6562 -1.1946 25 1 3.6650 1.7107 -1.1026 26 1 4.1183 3.1420 -3.0402 27 1 4.1649 1.7176 -4.1662 28 1 6.5068 1.5735 -3.4589 29 1 6.1533 2.4117 -1.8862 30 1 5.1829 -0.3862 -2.8162 31 1 5.5649 0.1571 -1.1257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717742446.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:07 Heat of formation + Delta-G solvation = -83.525438 kcal Electronic energy + Delta-G solvation = -15244.244319 eV Core-core repulsion = 12652.372330 eV Total energy + Delta-G solvation = -2591.871990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.43315 -38.10637 -37.22861 -36.91539 -34.09478 -30.10130 -27.28590 -27.16140 -26.71059 -22.82728 -21.19189 -19.86750 -19.20185 -18.19076 -17.71521 -17.13224 -16.53874 -16.23996 -15.34581 -14.59707 -14.52051 -14.04711 -13.61636 -13.51060 -13.45722 -13.28693 -13.08338 -13.02612 -12.93215 -12.79962 -12.37551 -12.23027 -11.97943 -11.59388 -11.50820 -11.27538 -10.93804 -10.56289 -9.98349 -8.13144 -6.28263 -0.54248 1.46981 1.48307 1.55564 1.91762 2.44714 2.87105 3.04394 3.16082 3.35112 3.70052 3.75461 3.89022 4.49875 4.57176 4.60771 4.73487 4.89903 4.96091 5.01956 5.05671 5.10883 5.16077 5.39025 5.59292 5.73077 6.01594 6.10956 6.44136 6.83802 7.41977 8.91934 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.008874 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.896160 B = 3154.370043 C = 3583.748457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.279 3.721 3 H 0.026 0.974 4 C -0.539 4.539 5 H 0.070 0.930 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.273 1.273 12 N -1.106 6.106 13 S 2.612 3.388 14 O -1.004 7.004 15 O -0.992 6.992 16 C -0.612 4.612 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.115 4.115 20 H 0.071 0.929 21 H 0.025 0.975 22 H 0.033 0.967 23 H 0.265 0.735 24 H 0.412 0.588 25 H 0.151 0.849 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 1.278 -7.027 11.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.173 3.827 3 H 0.043 0.957 4 C -0.578 4.578 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.864 5.864 13 S 2.709 3.291 14 O -0.994 6.994 15 O -0.983 6.983 16 C -0.726 4.726 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.153 4.153 20 H 0.090 0.910 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.246 0.754 25 H 0.168 0.832 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.717 1.535 -7.730 11.751 hybrid contribution 0.095 -0.527 1.520 1.611 sum 8.812 1.008 -6.211 10.827 Atomic orbital electron populations 1.22162 0.99098 0.99663 1.00395 1.18219 0.90885 0.91515 0.82080 0.95674 1.21586 1.32008 1.13474 0.90749 0.91230 1.25703 0.95020 0.95651 1.01899 1.69994 1.36975 1.23829 1.24611 0.85550 0.78886 0.78525 0.78279 1.19279 1.21237 1.19867 1.55376 1.81877 1.18865 1.30315 1.04607 0.76463 0.74813 0.73199 1.93509 1.48967 1.71791 1.85103 1.93491 1.85120 1.58426 1.61271 1.31890 1.15500 1.14034 1.11147 1.22787 0.97798 1.00207 0.95104 1.22759 0.95174 0.95847 1.01504 1.22756 0.90317 0.98308 1.03934 0.91031 0.95590 0.94778 0.92532 0.75424 0.83154 0.88358 0.88662 0.88383 0.88408 0.88192 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.70 9.29 71.98 0.67 -7.04 16 2 C 0.28 13.48 2.66 44.25 0.12 13.60 16 3 H 0.03 1.28 7.14 -2.39 -0.02 1.26 16 4 C -0.54 -27.38 8.76 25.60 0.22 -27.16 16 5 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -49.91 11.32 21.45 0.24 -49.67 16 8 Si 0.96 40.87 29.54 68.60 2.03 42.90 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 N -1.11 -45.14 5.35 -172.52 -0.92 -46.06 16 13 S 2.61 96.95 5.35 -56.49 -0.30 96.64 16 14 O -1.00 -44.56 17.11 -127.65 -2.18 -46.74 16 15 O -0.99 -38.40 17.26 -127.65 -2.20 -40.60 16 16 C -0.61 -17.87 4.31 31.18 0.13 -17.73 16 17 C -0.12 -2.72 7.66 31.12 0.24 -2.48 16 18 C -0.11 -2.16 8.08 31.12 0.25 -1.91 16 19 C -0.11 -2.78 7.65 31.18 0.24 -2.54 16 20 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 21 H 0.03 1.25 7.42 -2.39 -0.02 1.23 16 22 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 24 H 0.41 15.58 8.79 -96.75 -0.85 14.73 16 25 H 0.15 4.60 7.42 -2.39 -0.02 4.59 16 26 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 1.99 8.10 -2.39 -0.02 1.97 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 2.38 7.43 -2.39 -0.02 2.36 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -63.99 270.19 -0.74 -64.73 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.28 Total: 22.70 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 2.32 Total: -43.89 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -0.68 Total: -95.73 kcal Atomic # 8 Polarization: -82.96 SS G_CDS: -4.39 Total: -87.34 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 96.95 SS G_CDS: -0.30 Total: 96.64 kcal Total: -63.99 -0.74 -64.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717742446.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.795 kcal (2) G-P(sol) polarization free energy of solvation -63.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds