Wall clock time and date at job start Thu Apr 9 2020 12:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47639 * 327.80100 * 3 2 1 5 5 C 1.36882 * 119.99583 * 83.18448 * 4 3 2 6 6 H 1.08003 * 119.99957 * 166.63560 * 5 4 3 7 7 C 1.39015 * 120.00433 * 346.63847 * 5 4 3 8 8 N 1.31394 * 119.99222 * 359.63744 * 7 5 4 9 9 Si 1.86792 * 120.00275 * 179.63778 * 7 5 4 10 10 H 1.48505 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47357 * 120.00036 * 9 7 5 12 12 H 1.48502 * 109.46998 * 239.99914 * 9 7 5 13 13 C 1.34775 * 120.00522 * 263.18973 * 4 3 2 14 14 O 1.21722 * 120.00425 * 184.71622 * 13 4 3 15 15 C 1.46637 * 119.99543 * 4.71430 * 13 4 3 16 16 N 1.38163 * 126.85042 * 103.08643 * 15 13 4 17 17 H 0.96994 * 126.48011 * 0.02562 * 16 15 13 18 18 C 1.34554 * 107.04658 * 180.28006 * 16 15 13 19 19 N 1.30867 * 109.17778 * 359.56231 * 18 16 15 20 20 C 1.33308 * 109.69867 * 0.44862 * 19 18 16 21 21 C 1.50700 * 126.11238 * 179.74836 * 20 19 18 22 22 H 4.40644 * 5.51518 * 180.02562 * 4 1 2 23 23 H 1.09007 * 109.46961 * 207.80500 * 3 2 1 24 24 H 1.08997 * 109.47265 * 87.80672 * 3 2 1 25 25 H 0.97008 * 119.99147 * 180.02562 * 8 7 5 26 26 H 1.07996 * 125.41161 * 179.71996 * 18 16 15 27 27 H 1.08995 * 109.47232 * 269.97175 * 21 20 19 28 28 H 1.08999 * 109.47020 * 29.97403 * 21 20 19 29 29 H 1.09006 * 109.46839 * 149.97390 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1679 0.7360 5 6 3.2310 -2.3807 0.1087 6 1 3.7851 -3.1848 0.5699 7 6 2.6155 -2.5774 -1.1221 8 7 1.9354 -1.6013 -1.6799 9 14 2.7551 -4.2293 -1.9829 10 1 3.5689 -5.1531 -1.1523 11 1 1.3990 -4.8024 -2.1773 12 1 3.4089 -4.0457 -3.3035 13 6 3.4901 -1.0488 2.0306 14 8 3.9767 -1.9974 2.6180 15 6 3.2903 0.2236 2.7316 16 7 2.2894 0.5234 3.6355 17 1 1.5811 -0.0704 3.9296 18 6 2.4794 1.7968 4.0265 19 7 3.5358 2.2787 3.4229 20 6 4.0575 1.3506 2.6207 21 6 5.2752 1.5137 1.7480 22 1 -1.0498 -0.0005 0.0001 23 1 3.0089 0.9099 0.4794 24 1 3.0093 -0.0385 -1.0269 25 1 1.5056 -1.7387 -2.5386 26 1 1.8603 2.3347 4.7291 27 1 4.9731 1.8827 0.7679 28 1 5.9600 2.2254 2.2091 29 1 5.7734 0.5506 1.6358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822681020.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:23 Heat of formation + Delta-G solvation = 96.333683 kcal Electronic energy + Delta-G solvation = -16297.942627 eV Core-core repulsion = 13610.718714 eV Total energy + Delta-G solvation = -2687.223913 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.090 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.64486 -38.36802 -35.29807 -32.80405 -32.05361 -31.40112 -30.48767 -26.98325 -26.44160 -24.68528 -22.15781 -20.61035 -19.03893 -18.00920 -17.57749 -16.52461 -15.97795 -14.75687 -14.65313 -14.41740 -14.01637 -13.64271 -12.87507 -12.61979 -12.52691 -12.24792 -12.10197 -11.75729 -11.37639 -11.17716 -10.55505 -10.42178 -9.88961 -9.61014 -9.53925 -9.30284 -8.82890 -8.68756 -8.07620 -7.81299 -6.38728 -4.01531 2.28394 2.96612 3.16220 3.20651 3.27087 3.40769 3.81695 3.86032 4.08420 4.18471 4.81341 4.97445 4.98912 5.46396 5.55653 5.61279 5.74888 6.10536 6.30648 6.30906 6.39289 6.48206 6.93541 7.06448 7.09146 7.41814 7.68852 7.87015 8.28363 8.37398 8.86688 8.96098 9.18698 9.71280 10.52959 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.032475 B = 0.009221 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.985468 B = 3035.819542 C = 3327.717293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.084 4.084 3 C 0.227 3.773 4 N -0.419 5.419 5 C -0.307 4.307 6 H 0.110 0.890 7 C 0.030 3.970 8 N -0.869 5.869 9 Si 0.936 3.064 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.506 3.494 14 O -0.578 6.578 15 C -0.022 4.022 16 N -0.544 5.544 17 H 0.421 0.579 18 C 0.178 3.822 19 N -0.494 5.494 20 C 0.024 3.976 21 C -0.069 4.069 22 H 0.196 0.804 23 H 0.063 0.937 24 H 0.126 0.874 25 H 0.271 0.729 26 H 0.206 0.794 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 5.491 3.320 6.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.087 4.087 3 C 0.105 3.895 4 N -0.135 5.135 5 C -0.434 4.434 6 H 0.127 0.873 7 C -0.173 4.173 8 N -0.508 5.508 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.292 3.708 14 O -0.462 6.462 15 C -0.141 4.141 16 N -0.147 5.147 17 H 0.259 0.741 18 C -0.105 4.105 19 N -0.214 5.214 20 C -0.108 4.108 21 C -0.127 4.127 22 H 0.213 0.787 23 H 0.081 0.919 24 H 0.143 0.857 25 H 0.082 0.918 26 H 0.222 0.778 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.772 5.813 3.478 6.818 hybrid contribution -1.291 -1.748 -0.432 2.216 sum -2.063 4.065 3.046 5.483 Atomic orbital electron populations 1.24153 0.95293 1.04910 1.06431 1.23009 0.94150 0.96168 0.95327 1.18688 0.84514 0.86665 0.99668 1.43614 1.53249 1.09175 1.07487 1.19873 1.31749 0.89782 1.02017 0.87272 1.25403 0.95207 0.99557 0.97162 1.69951 1.32113 1.31018 1.17746 0.85700 0.78159 0.81037 0.78903 1.19099 1.20657 1.20453 1.16589 0.86717 0.85399 0.82069 1.90682 1.49218 1.39591 1.66708 1.21165 0.94679 0.98374 0.99908 1.43182 1.24135 1.13446 1.33945 0.74124 1.24772 0.98889 0.83152 1.03719 1.69871 1.09107 1.31429 1.11013 1.20815 0.99755 0.89024 1.01188 1.20084 0.92772 1.02645 0.97174 0.78709 0.91936 0.85704 0.91805 0.77752 0.91127 0.91217 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.14 19.25 29.55 0.57 -5.57 15 2 C -0.08 -1.94 11.01 -37.12 -0.41 -2.35 15 3 C 0.23 5.17 5.12 -6.83 -0.03 5.14 15 4 N -0.42 -10.45 2.60 -119.44 -0.31 -10.76 15 5 C -0.31 -8.18 9.46 -15.01 -0.14 -8.32 15 6 H 0.11 3.04 7.22 -52.48 -0.38 2.67 15 7 C 0.03 0.75 5.36 -17.45 -0.09 0.66 15 8 N -0.87 -21.80 7.99 55.50 0.44 -21.36 15 9 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 15 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 13 C 0.51 12.43 7.11 -12.87 -0.09 12.34 15 14 O -0.58 -16.09 16.72 5.17 0.09 -16.01 15 15 C -0.02 -0.45 5.59 -82.15 -0.46 -0.91 15 16 N -0.54 -9.15 6.19 -10.78 -0.07 -9.22 15 17 H 0.42 6.06 8.96 -40.82 -0.37 5.70 15 18 C 0.18 2.67 13.01 -90.51 -1.18 1.49 15 19 N -0.49 -8.90 11.20 -10.60 -0.12 -9.02 15 20 C 0.02 0.46 6.08 -82.48 -0.50 -0.04 15 21 C -0.07 -1.16 9.88 36.01 0.36 -0.80 15 22 H 0.20 3.41 7.80 -54.10 -0.42 2.99 15 23 H 0.06 1.31 4.99 -51.93 -0.26 1.05 15 24 H 0.13 2.97 6.33 -51.93 -0.33 2.64 15 25 H 0.27 6.52 8.31 -40.82 -0.34 6.18 15 26 H 0.21 2.01 8.06 -52.49 -0.42 1.59 15 27 H 0.07 1.10 7.66 -51.93 -0.40 0.70 15 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 29 H 0.07 1.25 7.94 -51.93 -0.41 0.84 15 LS Contribution 262.84 15.07 3.96 3.96 Total: -1.00 -31.68 262.84 -5.56 -37.23 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.54 Total: 8.54 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.98 Total: 1.63 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.05 Total: -50.36 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.01 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.68 -5.56 -37.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822681020.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.568 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds