Wall clock time and date at job start Thu Apr 9 2020 12:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47639 * 327.80100 * 3 2 1 5 5 C 1.36882 * 119.99583 * 83.18448 * 4 3 2 6 6 H 1.08003 * 119.99957 * 166.63560 * 5 4 3 7 7 C 1.39015 * 120.00433 * 346.63847 * 5 4 3 8 8 N 1.31394 * 119.99222 * 359.63744 * 7 5 4 9 9 Si 1.86792 * 120.00275 * 179.63778 * 7 5 4 10 10 H 1.48505 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47357 * 120.00036 * 9 7 5 12 12 H 1.48502 * 109.46998 * 239.99914 * 9 7 5 13 13 C 1.34775 * 120.00522 * 263.18973 * 4 3 2 14 14 O 1.21722 * 120.00425 * 184.71622 * 13 4 3 15 15 C 1.46637 * 119.99543 * 4.71430 * 13 4 3 16 16 N 1.38163 * 126.85042 * 103.08643 * 15 13 4 17 17 H 0.96994 * 126.48011 * 0.02562 * 16 15 13 18 18 C 1.34554 * 107.04658 * 180.28006 * 16 15 13 19 19 N 1.30867 * 109.17778 * 359.56231 * 18 16 15 20 20 C 1.33308 * 109.69867 * 0.44862 * 19 18 16 21 21 C 1.50700 * 126.11238 * 179.74836 * 20 19 18 22 22 H 4.40644 * 5.51518 * 180.02562 * 4 1 2 23 23 H 1.09007 * 109.46961 * 207.80500 * 3 2 1 24 24 H 1.08997 * 109.47265 * 87.80672 * 3 2 1 25 25 H 0.97008 * 119.99147 * 180.02562 * 8 7 5 26 26 H 1.07996 * 125.41161 * 179.71996 * 18 16 15 27 27 H 1.08995 * 109.47232 * 269.97175 * 21 20 19 28 28 H 1.08999 * 109.47020 * 29.97403 * 21 20 19 29 29 H 1.09006 * 109.46839 * 149.97390 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1679 0.7360 5 6 3.2310 -2.3807 0.1087 6 1 3.7851 -3.1848 0.5699 7 6 2.6155 -2.5774 -1.1221 8 7 1.9354 -1.6013 -1.6799 9 14 2.7551 -4.2293 -1.9829 10 1 3.5689 -5.1531 -1.1523 11 1 1.3990 -4.8024 -2.1773 12 1 3.4089 -4.0457 -3.3035 13 6 3.4901 -1.0488 2.0306 14 8 3.9767 -1.9974 2.6180 15 6 3.2903 0.2236 2.7316 16 7 2.2894 0.5234 3.6355 17 1 1.5811 -0.0704 3.9296 18 6 2.4794 1.7968 4.0265 19 7 3.5358 2.2787 3.4229 20 6 4.0575 1.3506 2.6207 21 6 5.2752 1.5137 1.7480 22 1 -1.0498 -0.0005 0.0001 23 1 3.0089 0.9099 0.4794 24 1 3.0093 -0.0385 -1.0269 25 1 1.5056 -1.7387 -2.5386 26 1 1.8603 2.3347 4.7291 27 1 4.9731 1.8827 0.7679 28 1 5.9600 2.2254 2.2091 29 1 5.7734 0.5506 1.6358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822681020.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:23 Heat of formation + Delta-G solvation = 76.032018 kcal Electronic energy + Delta-G solvation = -16298.822973 eV Core-core repulsion = 13610.718714 eV Total energy + Delta-G solvation = -2688.104259 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.04100 -40.22187 -37.22498 -34.19823 -33.90419 -33.19008 -31.95753 -28.60887 -28.14374 -26.46556 -23.67713 -22.10365 -20.54482 -19.83013 -19.15659 -18.30802 -17.69776 -16.47260 -16.30016 -15.96102 -15.69010 -15.16223 -14.68624 -14.27127 -14.12640 -13.83210 -13.64699 -13.20954 -13.06684 -12.91759 -12.52664 -12.15575 -11.48695 -11.39278 -11.05217 -10.87586 -10.66320 -10.49998 -9.98670 -9.28085 -8.30712 -6.02774 0.84948 1.26419 1.41502 1.52523 1.60688 2.01915 2.12306 2.24859 2.36903 2.43042 3.04579 3.21676 3.65511 3.89284 4.04626 4.21174 4.36002 4.61559 4.80506 4.94724 5.01500 5.05029 5.12386 5.38628 5.42163 5.64676 5.92402 6.34200 6.48347 6.99456 7.03136 7.14377 7.27478 7.80914 8.58195 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.032475 B = 0.009221 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.985468 B = 3035.819542 C = 3327.717293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.128 4.128 3 C 0.237 3.763 4 N -0.424 5.424 5 C -0.346 4.346 6 H 0.083 0.917 7 C 0.004 3.996 8 N -0.873 5.873 9 Si 0.996 3.004 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.265 1.265 13 C 0.504 3.496 14 O -0.626 6.626 15 C -0.065 4.065 16 N -0.541 5.541 17 H 0.431 0.569 18 C 0.212 3.788 19 N -0.518 5.518 20 C 0.028 3.972 21 C -0.070 4.070 22 H 0.231 0.769 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.275 0.725 26 H 0.263 0.737 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 6.713 3.399 8.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.130 4.130 3 C 0.115 3.885 4 N -0.140 5.140 5 C -0.473 4.473 6 H 0.101 0.899 7 C -0.199 4.199 8 N -0.511 5.511 9 Si 0.820 3.180 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.190 1.190 13 C 0.292 3.708 14 O -0.514 6.514 15 C -0.183 4.183 16 N -0.145 5.145 17 H 0.270 0.730 18 C -0.071 4.071 19 N -0.239 5.239 20 C -0.104 4.104 21 C -0.128 4.128 22 H 0.248 0.752 23 H 0.095 0.905 24 H 0.127 0.873 25 H 0.086 0.914 26 H 0.278 0.722 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.269 7.062 3.533 8.216 hybrid contribution -0.906 -2.037 -0.413 2.268 sum -3.175 5.024 3.120 6.713 Atomic orbital electron populations 1.25016 0.96215 1.02958 1.04480 1.23251 0.94750 0.97939 0.97097 1.18538 0.85004 0.86387 0.98528 1.43744 1.53016 1.09267 1.07928 1.19796 1.33694 0.90409 1.03404 0.89880 1.26082 0.94300 1.02617 0.96895 1.70074 1.31315 1.31932 1.17730 0.84820 0.78116 0.77075 0.78008 1.19933 1.20082 1.19006 1.17066 0.85487 0.86311 0.81922 1.90623 1.51187 1.41871 1.67709 1.20626 0.97619 0.97382 1.02693 1.43187 1.23745 1.14350 1.33229 0.72982 1.25935 0.97445 0.82013 1.01716 1.69945 1.10635 1.31357 1.11951 1.21135 0.99673 0.88709 1.00909 1.20145 0.92565 1.02364 0.97720 0.75204 0.90495 0.87314 0.91423 0.72186 0.90074 0.89117 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.81 19.25 74.32 1.43 -9.38 15 2 C -0.13 -5.81 11.01 31.13 0.34 -5.47 15 3 C 0.24 10.92 5.12 84.57 0.43 11.36 15 4 N -0.42 -21.83 2.60 -649.99 -1.69 -23.52 15 5 C -0.35 -19.10 9.46 84.09 0.80 -18.30 15 6 H 0.08 4.92 7.22 -2.91 -0.02 4.90 15 7 C 0.00 0.19 5.36 84.94 0.45 0.65 15 8 N -0.87 -43.48 7.99 21.68 0.17 -43.31 15 9 Si 1.00 41.12 29.55 68.60 2.03 43.15 15 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 11 H -0.28 -11.10 7.11 99.48 0.71 -10.40 15 12 H -0.27 -10.33 7.11 99.48 0.71 -9.63 15 13 C 0.50 25.65 7.11 86.44 0.61 26.26 15 14 O -0.63 -36.64 16.72 -4.42 -0.07 -36.71 15 15 C -0.06 -2.68 5.59 40.00 0.22 -2.45 15 16 N -0.54 -17.28 6.19 -188.01 -1.16 -18.44 15 17 H 0.43 11.73 8.96 -92.71 -0.83 10.90 15 18 C 0.21 5.64 13.01 180.31 2.35 7.98 15 19 N -0.52 -17.39 11.20 -187.46 -2.10 -19.49 15 20 C 0.03 1.04 6.08 41.99 0.26 1.30 15 21 C -0.07 -2.34 9.88 71.24 0.70 -1.63 15 22 H 0.23 7.19 7.80 -4.42 -0.03 7.15 15 23 H 0.08 3.24 4.99 -2.38 -0.01 3.23 15 24 H 0.11 5.28 6.33 -2.39 -0.02 5.27 15 25 H 0.27 12.94 8.31 -92.70 -0.77 12.17 15 26 H 0.26 3.62 8.06 -2.91 -0.02 3.59 15 27 H 0.08 2.49 7.66 -2.39 -0.02 2.47 15 28 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 29 H 0.05 1.98 7.94 -2.38 -0.02 1.96 15 Total: -1.00 -69.86 262.84 5.13 -64.74 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.36 Total: 23.28 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 7.60 Total: 10.31 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -4.78 Total: -104.76 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.07 Total: -36.71 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -69.86 5.13 -64.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822681020.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.768 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds