Wall clock time and date at job start Thu Apr 9 2020 12:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99508 * 2 1 4 4 H 1.48500 * 109.46756 * 269.99504 * 3 2 1 5 5 H 1.48496 * 109.47426 * 29.99607 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99793 * 3 2 1 7 7 C 1.37878 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 C 1.52994 * 112.85291 * 48.80009 * 13 11 10 15 15 F 1.39898 * 109.47559 * 309.66806 * 14 13 11 16 16 F 1.39900 * 109.47016 * 69.66859 * 14 13 11 17 17 C 1.53789 * 113.61207 * 277.49245 * 13 11 10 18 18 C 1.53781 * 87.07999 * 220.02204 * 17 13 11 19 19 C 1.53785 * 87.08407 * 25.43428 * 18 17 13 20 20 H 0.96996 * 120.00207 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 22 22 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 23 23 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 24 24 H 1.09004 * 109.47120 * 189.66183 * 14 13 11 25 25 H 1.09001 * 113.61182 * 334.56987 * 17 13 11 26 26 H 1.08996 * 113.61248 * 105.47426 * 17 13 11 27 27 H 1.09001 * 113.61382 * 270.88500 * 18 17 13 28 28 H 1.09004 * 113.61016 * 139.98068 * 18 17 13 29 29 H 1.08992 * 113.61366 * 220.01838 * 19 18 17 30 30 H 1.08996 * 113.61272 * 89.11122 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1132 -1.8994 0.0034 13 6 5.8274 -4.2421 0.0080 14 6 5.1499 -5.1164 -1.0490 15 9 3.7615 -4.9761 -0.9502 16 9 5.5694 -4.7176 -2.3227 17 6 5.8596 -4.8782 1.4078 18 6 7.1983 -5.5164 1.0010 19 6 7.3613 -4.3532 0.0084 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8912 22 1 3.8753 -0.6802 -0.8887 23 1 3.3696 -3.3125 0.0002 24 1 5.4222 -6.1593 -0.8869 25 1 5.9497 -4.1518 2.2155 26 1 5.0635 -5.6034 1.5763 27 1 7.0903 -6.4887 0.5204 28 1 7.9416 -5.5174 1.7983 29 1 7.7775 -4.6546 -0.9528 30 1 7.8619 -3.4833 0.4335 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867874013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:26 Heat of formation + Delta-G solvation = -123.759301 kcal Electronic energy + Delta-G solvation = -16987.042510 eV Core-core repulsion = 13839.585462 eV Total energy + Delta-G solvation = -3147.457047 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.01122 -46.99210 -40.08970 -37.47049 -34.28900 -32.33223 -29.11360 -27.48382 -25.84784 -24.60914 -22.18615 -20.42787 -19.32446 -18.03592 -17.14595 -17.12401 -16.33855 -15.89794 -15.17246 -14.78056 -14.29839 -14.27481 -13.92181 -13.35675 -13.16769 -12.67602 -12.58788 -12.46916 -12.38034 -11.94949 -11.67702 -11.27945 -10.98499 -10.76007 -10.60292 -10.50765 -9.95059 -9.46505 -9.19775 -8.75594 -8.14905 -6.18613 -4.20599 2.98355 3.28321 3.34529 3.42757 3.60922 3.77632 4.05533 4.20170 4.31577 4.35530 4.52006 4.77481 4.94131 5.10301 5.16319 5.40923 5.57410 5.62040 5.69905 5.79702 5.88202 6.17113 6.80656 7.07875 7.22635 7.40424 8.14132 8.53741 8.76243 8.90384 9.41120 10.93430 Molecular weight = 233.10amu Principal moments of inertia in cm(-1) A = 0.036771 B = 0.007436 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.280251 B = 3764.749501 C = 4037.716582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.698 5.698 11 C 0.515 3.485 12 O -0.551 6.551 13 C -0.175 4.175 14 C 0.290 3.710 15 F -0.192 7.192 16 F -0.197 7.197 17 C -0.110 4.110 18 C -0.145 4.145 19 C -0.102 4.102 20 H 0.267 0.733 21 H 0.026 0.974 22 H 0.021 0.979 23 H 0.402 0.598 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -13.138 1.251 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.098 0.902 9 C 0.096 3.904 10 N -0.349 5.349 11 C 0.299 3.701 12 O -0.430 6.430 13 C -0.179 4.179 14 C 0.236 3.764 15 F -0.173 7.173 16 F -0.178 7.178 17 C -0.148 4.148 18 C -0.183 4.183 19 C -0.140 4.140 20 H 0.077 0.923 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.240 0.760 24 H 0.136 0.864 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.746 -12.322 1.220 17.770 hybrid contribution -0.218 0.665 -0.201 0.728 sum 12.527 -11.658 1.019 17.143 Atomic orbital electron populations 1.69883 1.06177 1.27370 1.49521 1.24792 0.94794 0.99102 0.93902 0.86821 0.80542 0.83273 0.79071 1.19831 1.20855 1.18564 1.21092 0.88451 0.95300 1.53161 0.90182 1.19526 0.95409 0.78656 0.96760 1.46510 1.05675 1.11744 1.70949 1.19763 0.83520 0.89026 0.77813 1.90637 1.55709 1.45229 1.51399 1.23379 1.00471 0.95530 0.98550 1.21480 0.75896 0.99304 0.79672 1.92918 1.31641 1.96824 1.95901 1.93010 1.89716 1.92981 1.42096 1.22843 0.98521 0.99844 0.93554 1.22966 0.97658 0.97865 0.99767 1.22775 0.90937 0.99701 1.00583 0.92279 0.95641 0.96135 0.76005 0.86357 0.88289 0.89952 0.89798 0.90242 0.90380 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 21.92 27.47 -169.99 -4.67 17.26 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.54 -15.47 9.83 -34.44 -0.34 -15.81 16 8 H 0.08 2.39 7.84 -52.49 -0.41 1.98 16 9 C 0.22 5.65 4.50 -5.19 -0.02 5.62 16 10 N -0.70 -15.32 5.28 -61.48 -0.32 -15.64 16 11 C 0.52 10.32 6.91 -10.98 -0.08 10.25 16 12 O -0.55 -12.82 15.90 5.56 0.09 -12.73 16 13 C -0.18 -2.45 0.92 -154.84 -0.14 -2.59 16 14 C 0.29 3.71 4.57 37.15 0.17 3.88 16 15 F -0.19 -2.91 14.49 2.25 0.03 -2.88 16 16 F -0.20 -2.98 17.06 2.25 0.04 -2.94 16 17 C -0.11 -1.18 7.20 -25.91 -0.19 -1.36 16 18 C -0.15 -1.21 7.73 -25.92 -0.20 -1.41 16 19 C -0.10 -1.19 6.93 -25.91 -0.18 -1.37 16 20 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 22 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 23 H 0.40 8.23 5.79 -40.82 -0.24 7.99 16 24 H 0.12 0.95 7.34 -51.93 -0.38 0.57 16 25 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 26 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.08 0.52 7.64 -51.93 -0.40 0.12 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 30 H 0.11 1.41 7.43 -51.93 -0.39 1.03 16 LS Contribution 260.36 15.07 3.92 3.92 Total: -1.00 -33.21 260.36 -4.63 -37.84 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.42 Total: 2.07 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.07 Total: -0.64 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.45 Total: -41.89 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.07 Total: -5.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.21 -4.63 -37.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867874013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.921 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds