Wall clock time and date at job start Thu Apr 9 2020 12:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99508 * 2 1 4 4 H 1.48500 * 109.46756 * 269.99504 * 3 2 1 5 5 H 1.48496 * 109.47426 * 29.99607 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99793 * 3 2 1 7 7 C 1.37878 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 C 1.52994 * 112.85291 * 48.80009 * 13 11 10 15 15 F 1.39898 * 109.47559 * 309.66806 * 14 13 11 16 16 F 1.39900 * 109.47016 * 69.66859 * 14 13 11 17 17 C 1.53789 * 113.61207 * 277.49245 * 13 11 10 18 18 C 1.53781 * 87.07999 * 220.02204 * 17 13 11 19 19 C 1.53785 * 87.08407 * 25.43428 * 18 17 13 20 20 H 0.96996 * 120.00207 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 22 22 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 23 23 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 24 24 H 1.09004 * 109.47120 * 189.66183 * 14 13 11 25 25 H 1.09001 * 113.61182 * 334.56987 * 17 13 11 26 26 H 1.08996 * 113.61248 * 105.47426 * 17 13 11 27 27 H 1.09001 * 113.61382 * 270.88500 * 18 17 13 28 28 H 1.09004 * 113.61016 * 139.98068 * 18 17 13 29 29 H 1.08992 * 113.61366 * 220.01838 * 19 18 17 30 30 H 1.08996 * 113.61272 * 89.11122 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1132 -1.8994 0.0034 13 6 5.8274 -4.2421 0.0080 14 6 5.1499 -5.1164 -1.0490 15 9 3.7615 -4.9761 -0.9502 16 9 5.5694 -4.7176 -2.3227 17 6 5.8596 -4.8782 1.4078 18 6 7.1983 -5.5164 1.0010 19 6 7.3613 -4.3532 0.0084 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8912 22 1 3.8753 -0.6802 -0.8887 23 1 3.3696 -3.3125 0.0002 24 1 5.4222 -6.1593 -0.8869 25 1 5.9497 -4.1518 2.2155 26 1 5.0635 -5.6034 1.5763 27 1 7.0903 -6.4887 0.5204 28 1 7.9416 -5.5174 1.7983 29 1 7.7775 -4.6546 -0.9528 30 1 7.8619 -3.4833 0.4335 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867874013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:26 Heat of formation + Delta-G solvation = -147.589230 kcal Electronic energy + Delta-G solvation = -16988.075853 eV Core-core repulsion = 13839.585462 eV Total energy + Delta-G solvation = -3148.490391 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.08967 -48.09287 -41.37428 -38.81067 -36.22473 -34.46689 -30.68235 -28.98260 -26.72043 -25.84583 -23.98285 -21.98437 -20.48999 -19.44382 -18.62667 -18.22819 -17.84942 -17.20767 -16.88635 -16.22228 -16.00549 -15.53743 -15.26742 -14.84306 -14.47850 -14.35409 -14.24112 -13.71600 -13.50357 -13.24843 -12.96136 -12.77092 -12.69288 -12.21772 -11.96633 -11.72240 -11.45283 -11.36306 -10.96741 -10.76628 -10.03811 -8.44333 -6.52342 1.28865 1.30181 1.43102 1.48243 2.23558 2.28869 2.66789 2.89910 3.02983 3.22042 3.33154 3.71315 3.75936 4.04184 4.09854 4.39234 4.69377 4.71233 4.77066 4.92926 4.95121 5.03289 5.11520 5.19253 5.38287 5.43770 6.02611 6.47325 6.72305 7.08078 7.26103 8.70694 Molecular weight = 233.10amu Principal moments of inertia in cm(-1) A = 0.036771 B = 0.007436 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.280251 B = 3764.749501 C = 4037.716582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.230 3.770 10 N -0.705 5.705 11 C 0.508 3.492 12 O -0.589 6.589 13 C -0.183 4.183 14 C 0.284 3.716 15 F -0.209 7.209 16 F -0.214 7.214 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.107 4.107 20 H 0.274 0.726 21 H 0.016 0.984 22 H 0.008 0.992 23 H 0.408 0.592 24 H 0.184 0.816 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.940 -14.742 1.571 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.173 4.173 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.589 4.589 8 H 0.073 0.927 9 C 0.106 3.894 10 N -0.357 5.357 11 C 0.294 3.706 12 O -0.471 6.471 13 C -0.187 4.187 14 C 0.231 3.769 15 F -0.191 7.191 16 F -0.195 7.195 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.145 4.145 20 H 0.083 0.917 21 H 0.034 0.966 22 H 0.025 0.975 23 H 0.247 0.753 24 H 0.200 0.800 25 H 0.101 0.899 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.249 -13.960 1.543 20.008 hybrid contribution -0.700 1.137 -0.303 1.369 sum 13.549 -12.824 1.240 18.697 Atomic orbital electron populations 1.69981 1.07648 1.28753 1.50323 1.25622 0.95620 1.02694 0.93349 0.85827 0.79227 0.79144 0.79503 1.19044 1.19180 1.18564 1.21251 0.89822 0.94616 1.53173 0.92695 1.19130 0.93638 0.81052 0.95561 1.46478 1.07044 1.10261 1.71885 1.20917 0.82164 0.91747 0.75743 1.90604 1.56333 1.47481 1.52681 1.23664 1.01983 0.91472 1.01554 1.22170 0.74635 1.01916 0.78227 1.92878 1.33308 1.96993 1.95880 1.92977 1.89782 1.93412 1.43345 1.22938 1.01147 0.99837 0.90745 1.22955 0.95919 0.97696 0.98868 1.22835 0.88686 1.00674 1.02311 0.91671 0.96614 0.97460 0.75255 0.79989 0.89893 0.87609 0.86169 0.88649 0.89224 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.96 21.45 0.30 -56.63 16 2 C 0.03 1.63 5.47 84.65 0.46 2.09 16 3 Si 0.94 45.52 27.47 68.60 1.88 47.41 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.26 -12.57 6.54 99.48 0.65 -11.92 16 7 C -0.55 -32.26 9.83 25.60 0.25 -32.00 16 8 H 0.05 3.41 7.84 -2.91 -0.02 3.39 16 9 C 0.23 12.15 4.50 85.63 0.38 12.53 16 10 N -0.70 -31.50 5.28 -466.79 -2.46 -33.97 16 11 C 0.51 20.45 6.91 87.65 0.61 21.05 16 12 O -0.59 -28.04 15.90 -3.04 -0.05 -28.09 16 13 C -0.18 -4.76 0.92 -52.40 -0.05 -4.81 16 14 C 0.28 6.44 4.57 71.98 0.33 6.77 16 15 F -0.21 -6.07 14.49 44.97 0.65 -5.42 16 16 F -0.21 -6.10 17.06 44.97 0.77 -5.33 16 17 C -0.11 -2.01 7.20 31.12 0.22 -1.78 16 18 C -0.12 -1.41 7.73 31.12 0.24 -1.17 16 19 C -0.11 -2.25 6.93 31.12 0.22 -2.03 16 20 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 21 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 22 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 23 H 0.41 17.00 5.79 -92.70 -0.54 16.46 16 24 H 0.18 1.89 7.34 -2.38 -0.02 1.87 16 25 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 26 H 0.11 1.48 8.10 -2.39 -0.02 1.46 16 27 H 0.12 0.66 7.64 -2.39 -0.02 0.64 16 28 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.09 1.65 7.93 -2.39 -0.02 1.64 16 30 H 0.08 2.14 7.43 -2.39 -0.02 2.13 16 Total: -1.00 -74.60 260.36 4.33 -70.27 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.57 Total: 11.10 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 2.67 Total: 0.65 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -2.16 Total: -90.60 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 9 Polarization: -12.17 SS G_CDS: 1.42 Total: -10.75 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -74.60 4.33 -70.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867874013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.316 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds