Wall clock time and date at job start Thu Apr 9 2020 12:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48493 * 109.47535 * 270.00102 * 3 2 1 5 5 H 1.48503 * 109.47075 * 30.00645 * 3 2 1 6 6 H 1.48504 * 109.46968 * 150.00340 * 3 2 1 7 7 C 1.37876 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.53515 * 114.16635 * 180.02562 * 9 7 2 11 11 N 1.47486 * 87.93048 * 220.32955 * 10 9 7 12 12 C 1.37819 * 111.00083 * 138.70870 * 11 10 9 13 13 N 1.32716 * 119.00752 * 359.72834 * 12 11 10 14 14 C 1.31894 * 120.93417 * 179.71925 * 13 12 11 15 15 C 1.40424 * 118.96534 * 0.54289 * 14 13 12 16 16 C 1.46807 * 120.89315 * 179.71061 * 15 14 13 17 17 O 1.21301 * 120.00192 * 0.02562 * 16 15 14 18 18 C 1.40413 * 118.20944 * 359.73280 * 15 14 13 19 19 N 1.31889 * 118.97880 * 359.97438 * 18 15 14 20 20 C 1.47480 * 87.83684 * 27.00978 * 11 10 9 21 21 H 0.97002 * 120.00886 * 359.97438 * 1 2 3 22 22 H 1.08994 * 113.38360 * 313.07869 * 9 7 2 23 23 H 1.09005 * 113.47774 * 105.56404 * 10 9 7 24 24 H 1.08997 * 113.53532 * 335.10559 * 10 9 7 25 25 H 1.07996 * 120.52057 * 180.28108 * 14 13 12 26 26 H 1.08001 * 120.00071 * 180.02562 * 16 15 14 27 27 H 1.08008 * 120.51481 * 180.02562 * 18 15 14 28 28 H 1.09005 * 113.47310 * 87.75367 * 20 11 10 29 29 H 1.08990 * 113.48150 * 218.22188 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.1498 -3.7437 -0.0005 11 7 1.2077 -4.3583 -0.9544 12 6 1.8817 -5.0413 -1.9437 13 7 3.2086 -5.0583 -1.9245 14 6 3.8918 -5.7046 -2.8492 15 6 3.1937 -6.3706 -3.8695 16 6 3.9117 -7.0976 -4.9236 17 8 5.1243 -7.1291 -4.9207 18 6 1.7905 -6.3220 -3.8546 19 7 1.1844 -5.6580 -2.8897 20 6 0.8555 -2.9966 -1.3979 21 1 -0.4851 0.8400 0.0004 22 1 0.4433 -2.5323 0.7305 23 1 2.1865 -4.2528 0.9626 24 1 3.1395 -3.5659 -0.4212 25 1 4.9714 -5.7178 -2.8246 26 1 3.3603 -7.6045 -5.7017 27 1 1.2163 -6.8214 -4.6211 28 1 1.4996 -2.6184 -2.1919 29 1 -0.2045 -2.8725 -1.6191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882604069.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:33 Heat of formation + Delta-G solvation = 69.648401 kcal Electronic energy + Delta-G solvation = -15476.966785 eV Core-core repulsion = 12788.585711 eV Total energy + Delta-G solvation = -2688.381074 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.090 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.35453 -39.34029 -38.32674 -33.79800 -33.10107 -31.89922 -28.69391 -25.58274 -25.42431 -24.17577 -23.42396 -21.42385 -19.03361 -17.90825 -17.60411 -16.67426 -16.05803 -15.34250 -15.21307 -14.76759 -14.37933 -14.22256 -13.92186 -13.54318 -12.84066 -12.21239 -12.00983 -11.34738 -11.18501 -11.02452 -10.90008 -10.59297 -10.17324 -9.92644 -9.78814 -9.43532 -9.22657 -9.00466 -8.57201 -8.27028 -6.16422 -4.21586 0.29439 1.17294 2.25767 3.24323 3.31754 3.35045 3.62340 3.81215 4.05540 4.16663 4.34010 4.48652 4.77245 5.03391 5.12627 5.29653 5.58637 5.78744 6.02368 6.17192 6.25349 6.52121 6.58709 6.70885 6.84285 6.96445 7.17679 7.55953 7.69303 7.83517 8.21440 8.21956 8.82458 9.44294 10.93030 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.040016 B = 0.005801 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.556156 B = 4825.782983 C = 5145.021888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.044 3.956 10 C 0.008 3.992 11 N -0.432 5.432 12 C 0.508 3.492 13 N -0.552 5.552 14 C 0.229 3.771 15 C -0.350 4.350 16 C 0.401 3.599 17 O -0.468 6.468 18 C 0.218 3.782 19 N -0.528 5.528 20 C 0.035 3.965 21 H 0.264 0.736 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.173 0.827 26 H 0.108 0.892 27 H 0.176 0.824 28 H 0.061 0.939 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 -10.944 -8.011 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.025 3.975 10 C -0.120 4.120 11 N -0.153 5.153 12 C 0.156 3.844 13 N -0.270 5.270 14 C 0.060 3.940 15 C -0.358 4.358 16 C 0.259 3.741 17 O -0.341 6.341 18 C 0.047 3.953 19 N -0.244 5.244 20 C -0.091 4.091 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.190 0.810 26 H 0.125 0.875 27 H 0.193 0.807 28 H 0.079 0.921 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.003 -10.747 -6.994 13.169 hybrid contribution 1.207 0.680 -1.072 1.752 sum 4.210 -10.066 -8.066 13.569 Atomic orbital electron populations 1.69954 1.06044 1.27113 1.48943 1.25044 0.94874 0.99397 0.94273 0.86549 0.79978 0.83043 0.78223 1.20604 1.21034 1.19632 1.20978 0.92991 0.89699 1.51791 0.91907 1.20210 0.94493 0.91371 0.91417 1.24248 0.97322 0.95963 0.94470 1.65810 1.26895 1.15176 1.07399 1.22574 0.85236 0.88549 0.88006 1.68688 1.08898 1.21259 1.28158 1.23525 1.00967 0.84048 0.85494 1.22514 0.97467 1.11575 1.04198 1.23595 0.89105 0.76516 0.84885 1.90541 1.17384 1.52666 1.73527 1.23509 0.90489 0.88327 0.92943 1.68214 1.40613 1.11380 1.04223 1.24288 1.01483 0.80412 1.02890 0.92622 0.91005 0.91092 0.88788 0.80968 0.87539 0.80708 0.92108 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 13.26 55.43 0.74 -23.91 15 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 15 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.52 -13.63 8.82 -34.44 -0.30 -13.93 15 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 15 9 C 0.04 1.08 3.77 -91.24 -0.34 0.74 15 10 C 0.01 0.17 6.93 -7.53 -0.05 0.11 15 11 N -0.43 -9.15 6.49 -184.94 -1.20 -10.35 15 12 C 0.51 9.78 6.75 -323.08 -2.18 7.60 15 13 N -0.55 -9.94 8.14 -13.60 -0.11 -10.05 15 14 C 0.23 3.32 10.88 -16.70 -0.18 3.14 15 15 C -0.35 -4.16 5.90 -104.79 -0.62 -4.77 15 16 C 0.40 3.73 11.48 34.19 0.39 4.13 15 17 O -0.47 -6.09 17.25 5.54 0.10 -5.99 15 18 C 0.22 2.63 11.10 -16.71 -0.19 2.44 15 19 N -0.53 -9.01 10.45 -13.60 -0.14 -9.15 15 20 C 0.03 0.79 7.23 -7.54 -0.05 0.73 15 21 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 22 H 0.07 1.88 8.11 -51.93 -0.42 1.45 15 23 H 0.07 1.42 8.14 -51.93 -0.42 0.99 15 24 H 0.09 2.03 6.55 -51.93 -0.34 1.69 15 25 H 0.17 2.16 7.73 -52.49 -0.41 1.76 15 26 H 0.11 0.50 8.06 -52.49 -0.42 0.07 15 27 H 0.18 1.22 8.06 -52.48 -0.42 0.79 15 28 H 0.06 1.42 7.85 -51.93 -0.41 1.01 15 29 H 0.08 1.86 8.14 -51.93 -0.42 1.43 15 LS Contribution 263.53 15.07 3.97 3.97 Total: -1.00 -30.72 263.53 -8.11 -38.83 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -2.81 Total: -0.79 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -3.63 Total: 1.89 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.72 Total: -53.47 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: 0.10 Total: -5.99 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.72 -8.11 -38.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882604069.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.480 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds