Wall clock time and date at job start Thu Apr 9 2020 12:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47128 * 44.68596 * 3 2 1 5 5 C 1.37099 * 119.99818 * 264.38562 * 4 3 2 6 6 H 1.08000 * 120.00137 * 196.17757 * 5 4 3 7 7 C 1.38960 * 119.99871 * 16.18538 * 5 4 3 8 8 N 1.31409 * 120.00135 * 20.84185 * 7 5 4 9 9 Si 1.86800 * 119.99793 * 200.84545 * 7 5 4 10 10 H 1.48506 * 109.46805 * 84.94234 * 9 7 5 11 11 H 1.48500 * 109.47018 * 204.93789 * 9 7 5 12 12 H 1.48504 * 109.47071 * 324.94248 * 9 7 5 13 13 C 1.34771 * 120.00185 * 84.39080 * 4 3 2 14 14 O 1.21288 * 119.99975 * 179.97438 * 13 4 3 15 15 C 1.50706 * 120.00042 * 359.97438 * 13 4 3 16 16 C 1.50701 * 109.46990 * 180.02562 * 15 13 4 17 17 C 1.34672 * 126.59150 * 275.04541 * 16 15 13 18 18 N 1.34131 * 108.01773 * 179.74938 * 17 16 15 19 19 C 1.30496 * 109.25564 * 0.36354 * 18 17 16 20 20 N 1.35049 * 108.70347 * 359.63568 * 19 18 17 21 21 H 0.96992 * 126.39647 * 180.24737 * 20 19 18 22 22 H 4.40642 * 5.51357 * 180.02562 * 4 1 2 23 23 H 1.09002 * 109.46669 * 284.68194 * 3 2 1 24 24 H 1.09006 * 109.46993 * 164.68700 * 3 2 1 25 25 H 0.97001 * 119.99861 * 180.02562 * 8 7 5 26 26 H 1.09005 * 109.46693 * 60.00125 * 15 13 4 27 27 H 1.09000 * 109.47176 * 300.00265 * 15 13 4 28 28 H 1.07995 * 125.98794 * 359.92562 * 17 16 15 29 29 H 1.08000 * 125.64845 * 179.89721 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.9811 -0.9713 5 6 3.4734 -2.2439 -0.5584 6 1 4.0692 -2.8792 -1.1970 7 6 3.0498 -2.7063 0.6816 8 7 2.0216 -2.1442 1.2764 9 14 3.9420 -4.1270 1.5032 10 1 5.1132 -3.6079 2.2543 11 1 3.0186 -4.8158 2.4403 12 1 4.4035 -5.0866 0.4680 13 6 3.2518 -0.6430 -2.2706 14 8 3.6569 -1.4557 -3.0747 15 6 2.8792 0.7449 -2.7246 16 6 3.0995 0.8635 -4.2107 17 6 4.2572 1.1652 -4.8290 18 7 4.0334 1.1655 -6.1515 19 6 2.7793 0.8830 -6.3758 20 7 2.1616 0.6843 -5.1914 21 1 1.2279 0.4568 -5.0603 22 1 -1.0498 -0.0001 -0.0003 23 1 3.0094 -0.2597 0.9942 24 1 3.0089 0.9921 -0.2714 25 1 1.7262 -2.4668 2.1421 26 1 3.4994 1.4757 -2.2054 27 1 1.8297 0.9321 -2.4972 28 1 5.2010 1.3683 -4.3450 29 1 2.3135 0.8149 -7.3478 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907980729.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:37 Heat of formation + Delta-G solvation = 71.328429 kcal Electronic energy + Delta-G solvation = -15819.675663 eV Core-core repulsion = 13131.367440 eV Total energy + Delta-G solvation = -2688.308222 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.89253 -40.38715 -37.07888 -34.20436 -33.52967 -33.01967 -32.51932 -28.64411 -27.88016 -26.09855 -22.52713 -22.05262 -20.92093 -19.69681 -18.58865 -18.38404 -17.96260 -16.55351 -16.22300 -15.94023 -15.54054 -15.19604 -14.51520 -14.32848 -14.27382 -13.99249 -13.80419 -13.45860 -13.03208 -12.77193 -12.43707 -12.16594 -11.19296 -11.09853 -10.96224 -10.88964 -10.63320 -10.35862 -9.82794 -9.25387 -8.31941 -5.91467 1.14374 1.36934 1.43386 1.52988 1.90926 2.12640 2.26681 2.33253 2.36501 2.40441 3.05353 3.29622 3.78598 3.89752 4.03122 4.16047 4.28271 4.52050 4.60155 4.75537 4.80112 5.03455 5.33478 5.44999 5.47864 5.81026 6.06446 6.45492 6.62185 7.14749 7.15958 7.16981 7.43599 8.00458 8.65870 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.033928 B = 0.007432 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.084703 B = 3766.649169 C = 4313.770667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.153 4.153 3 C 0.229 3.771 4 N -0.451 5.451 5 C -0.350 4.350 6 H 0.071 0.929 7 C 0.006 3.994 8 N -0.871 5.871 9 Si 0.980 3.020 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.442 3.558 14 O -0.624 6.624 15 C -0.046 4.046 16 C 0.001 3.999 17 C -0.041 4.041 18 N -0.534 5.534 19 C 0.187 3.813 20 N -0.558 5.558 21 H 0.430 0.570 22 H 0.232 0.768 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.272 0.728 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.166 0.834 29 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 8.405 -3.331 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.154 4.154 3 C 0.107 3.893 4 N -0.169 5.169 5 C -0.477 4.477 6 H 0.089 0.911 7 C -0.198 4.198 8 N -0.508 5.508 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.232 3.768 14 O -0.511 6.511 15 C -0.087 4.087 16 C -0.115 4.115 17 C -0.188 4.188 18 N -0.254 5.254 19 C -0.097 4.097 20 N -0.162 5.162 21 H 0.270 0.730 22 H 0.249 0.751 23 H 0.113 0.887 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.122 0.878 28 H 0.184 0.816 29 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.259 8.152 -4.115 9.696 hybrid contribution -0.861 -1.395 1.241 2.056 sum -4.121 6.757 -2.874 8.420 Atomic orbital electron populations 1.25146 0.96350 1.03112 1.01935 1.23476 0.94983 0.97894 0.99077 1.18421 0.84579 0.91296 0.95005 1.43882 1.56059 1.11360 1.05616 1.19519 1.32622 0.92948 1.02656 0.91063 1.25872 0.95461 1.00985 0.97454 1.70156 1.20941 1.43039 1.16701 0.85152 0.78486 0.78050 0.77841 1.18989 1.20245 1.20680 1.20828 0.83402 0.90795 0.81771 1.90525 1.52469 1.54579 1.53480 1.19965 1.04668 0.94914 0.89192 1.20683 0.91125 1.08437 0.91301 1.22131 0.98053 1.08534 0.90088 1.70179 1.16397 1.21936 1.16924 1.25690 0.89159 1.02908 0.91911 1.43191 1.12867 1.53436 1.06735 0.73049 0.75128 0.88725 0.87859 0.91810 0.85150 0.87794 0.81646 0.73513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.01 19.25 74.32 1.43 -7.58 15 2 C -0.15 -6.22 10.95 31.13 0.34 -5.88 15 3 C 0.23 9.40 4.91 84.57 0.42 9.81 15 4 N -0.45 -22.05 2.60 -645.40 -1.68 -23.73 15 5 C -0.35 -19.32 9.35 84.04 0.79 -18.53 15 6 H 0.07 4.31 7.36 -2.91 -0.02 4.29 15 7 C 0.01 0.29 4.90 84.93 0.42 0.71 15 8 N -0.87 -43.94 9.39 21.67 0.20 -43.74 15 9 Si 0.98 41.55 29.60 68.60 2.03 43.58 15 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 15 11 H -0.28 -11.31 7.11 99.48 0.71 -10.61 15 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 13 C 0.44 20.77 7.56 87.66 0.66 21.43 15 14 O -0.62 -35.14 15.67 -3.05 -0.05 -35.19 15 15 C -0.05 -1.56 4.86 29.10 0.14 -1.42 15 16 C 0.00 0.05 5.73 40.95 0.23 0.28 15 17 C -0.04 -1.47 11.79 83.52 0.98 -0.49 15 18 N -0.53 -18.51 11.25 -200.31 -2.25 -20.77 15 19 C 0.19 5.00 13.04 180.26 2.35 7.35 15 20 N -0.56 -15.45 6.15 -186.49 -1.15 -16.60 15 21 H 0.43 9.23 8.96 -92.71 -0.83 8.40 15 22 H 0.23 6.43 7.80 -4.43 -0.03 6.39 15 23 H 0.09 4.21 6.34 -2.39 -0.02 4.19 15 24 H 0.10 3.27 6.68 -2.38 -0.02 3.25 15 25 H 0.27 13.04 8.31 -92.71 -0.77 12.27 15 26 H 0.13 3.58 7.41 -2.38 -0.02 3.56 15 27 H 0.10 3.13 7.52 -2.39 -0.02 3.11 15 28 H 0.17 5.57 8.06 -2.91 -0.02 5.54 15 29 H 0.25 3.86 8.06 -2.91 -0.02 3.84 15 Total: -1.00 -73.38 264.84 5.22 -68.16 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.35 Total: 22.59 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 7.76 Total: 5.69 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.88 Total: -104.83 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.05 Total: -35.19 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -73.38 5.22 -68.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907980729.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.492 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds