Wall clock time and date at job start Thu Apr 9 2020 12:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47324 * 2 1 4 4 C 1.34774 * 119.99742 * 275.00493 * 3 2 1 5 5 O 1.21632 * 120.00247 * 359.97438 * 4 3 2 6 6 C 1.46877 * 119.99701 * 179.97438 * 4 3 2 7 7 C 1.34502 * 119.99891 * 188.44335 * 6 4 3 8 8 C 1.47545 * 119.99893 * 31.22101 * 7 6 4 9 9 C 1.39972 * 120.57860 * 185.44042 * 8 7 6 10 10 C 1.38502 * 118.24066 * 179.78346 * 9 8 7 11 11 N 1.32336 * 119.18774 * 0.48904 * 10 9 8 12 12 C 1.31873 * 121.11519 * 359.75207 * 11 10 9 13 13 N 1.31578 * 121.94016 * 359.97438 * 12 11 10 14 14 C 1.50704 * 109.47254 * 119.99834 * 2 1 3 15 15 N 1.27942 * 119.99763 * 84.99922 * 14 2 1 16 16 Si 1.86800 * 120.00108 * 264.99946 * 14 2 1 17 17 H 1.48501 * 109.46981 * 89.99917 * 16 14 2 18 18 H 1.48497 * 109.47142 * 210.00006 * 16 14 2 19 19 H 1.48503 * 109.46886 * 330.00197 * 16 14 2 20 20 H 1.09005 * 109.46794 * 300.00039 * 1 2 3 21 21 H 1.08995 * 109.47230 * 59.99829 * 1 2 3 22 22 H 1.09002 * 109.46881 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47146 * 239.99925 * 2 1 3 24 24 H 0.97001 * 119.99893 * 94.99992 * 3 2 1 25 25 H 1.08000 * 120.00550 * 8.44159 * 6 4 3 26 26 H 1.08000 * 120.00494 * 211.22322 * 7 6 4 27 27 H 1.08000 * 120.88706 * 359.97438 * 9 8 7 28 28 H 1.07997 * 120.40611 * 180.23682 * 10 9 8 29 29 H 1.08003 * 119.03219 * 179.97438 * 12 11 10 30 30 H 0.97001 * 119.99921 * 179.97438 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1470 2.0505 -1.1628 5 8 1.8581 1.5076 -2.2122 6 6 2.6361 3.4354 -1.1627 7 6 2.6049 4.1597 -2.2956 8 6 1.5454 3.9214 -3.2945 9 6 1.5653 4.5865 -4.5260 10 6 0.5493 4.3230 -5.4296 11 7 -0.4034 3.4664 -5.0979 12 6 -0.3966 2.8594 -3.9271 13 7 0.5496 3.0727 -3.0380 14 6 2.0324 -0.7104 1.2305 15 7 2.1545 -1.9840 1.2288 16 14 2.4767 0.2685 2.7582 17 1 1.2794 0.4011 3.6266 18 1 3.5521 -0.4355 3.5018 19 1 2.9516 1.6182 2.3604 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 2.2491 1.8141 0.8369 25 1 3.0208 3.8723 -0.2530 26 1 3.3552 4.9156 -2.4742 27 1 2.3537 5.2843 -4.7666 28 1 0.5324 4.8136 -6.3915 29 1 -1.1910 2.1669 -3.6911 30 1 2.4782 -2.4412 2.0207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116772766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:46 Heat of formation + Delta-G solvation = 87.839432 kcal Electronic energy + Delta-G solvation = -16105.140374 eV Core-core repulsion = 13403.892383 eV Total energy + Delta-G solvation = -2701.247991 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.098 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.79139 -40.59684 -37.84587 -35.73154 -34.99555 -33.61952 -32.32807 -31.00735 -26.57361 -25.41918 -25.00897 -23.15901 -21.48950 -20.51519 -18.92717 -18.14911 -17.95276 -16.99194 -16.42863 -16.34057 -15.76989 -15.66479 -15.47323 -15.11948 -14.70176 -14.41969 -14.18571 -14.08465 -13.60646 -13.17662 -12.87630 -12.39710 -12.27696 -12.02131 -11.69858 -11.57184 -11.02114 -10.59097 -10.22309 -10.01240 -9.82175 -9.59279 -0.73691 0.17746 0.62413 0.83441 0.90157 1.10850 1.45940 1.59512 2.24699 2.44109 3.06236 3.10575 3.37066 3.40091 3.50866 3.86342 4.02231 4.16629 4.27627 4.35306 4.43286 4.60031 4.62800 4.71633 4.87954 4.91448 5.05672 5.12160 5.34827 5.51981 5.54532 6.17529 6.53142 6.73231 7.28937 7.42352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 N -0.733 5.733 4 C 0.549 3.451 5 O -0.500 6.500 6 C -0.160 4.160 7 C -0.045 4.045 8 C 0.185 3.815 9 C -0.211 4.211 10 C 0.143 3.857 11 N -0.521 5.521 12 C 0.293 3.707 13 N -0.465 5.465 14 C -0.016 4.016 15 N -0.617 5.617 16 Si 0.929 3.071 17 H -0.231 1.231 18 H -0.241 1.241 19 H -0.235 1.235 20 H 0.057 0.943 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.395 0.605 25 H 0.142 0.858 26 H 0.153 0.847 27 H 0.148 0.852 28 H 0.168 0.832 29 H 0.192 0.808 30 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 4.068 3.839 6.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 N -0.392 5.392 4 C 0.336 3.664 5 O -0.374 6.374 6 C -0.184 4.184 7 C -0.066 4.066 8 C 0.041 3.959 9 C -0.233 4.233 10 C -0.024 4.024 11 N -0.235 5.235 12 C 0.005 3.995 13 N -0.179 5.179 14 C -0.266 4.266 15 N -0.230 5.230 16 Si 0.746 3.254 17 H -0.154 1.154 18 H -0.164 1.164 19 H -0.159 1.159 20 H 0.076 0.924 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.128 0.872 24 H 0.234 0.766 25 H 0.160 0.840 26 H 0.171 0.829 27 H 0.166 0.834 28 H 0.185 0.815 29 H 0.209 0.791 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.437 2.698 3.323 4.515 hybrid contribution 1.059 0.797 0.785 1.541 sum 2.496 3.495 4.108 5.943 Atomic orbital electron populations 1.22059 0.93052 1.03029 1.03081 1.19810 0.94917 0.81321 0.96843 1.46431 1.68843 1.14417 1.09467 1.18284 0.77618 0.86938 0.83521 1.90822 1.46439 1.69110 1.31017 1.23247 1.02763 0.93786 0.98585 1.22226 0.93633 0.99354 0.91343 1.20394 0.93132 0.90347 0.92060 1.23011 1.01888 1.03250 0.95126 1.23179 0.88368 0.91758 0.99064 1.68360 1.26452 1.08510 1.20183 1.24895 0.94683 0.94959 0.84939 1.68789 1.01754 1.12389 1.34979 1.30514 0.94233 0.97406 1.04458 1.68034 1.09907 1.10946 1.34145 0.85701 0.82534 0.80700 0.76476 1.15405 1.16382 1.15869 0.92360 0.90657 0.91075 0.87166 0.76621 0.83983 0.82941 0.83438 0.81487 0.79097 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.04 9.47 37.16 0.35 0.31 16 2 C 0.18 0.11 2.87 -69.08 -0.20 -0.08 16 3 N -0.73 0.11 4.85 -56.19 -0.27 -0.16 16 4 C 0.55 1.01 7.01 -12.77 -0.09 0.92 16 5 O -0.50 -2.71 12.84 5.25 0.07 -2.64 16 6 C -0.16 0.16 9.91 -37.41 -0.37 -0.21 16 7 C -0.05 0.04 9.82 -37.11 -0.36 -0.32 16 8 C 0.18 0.35 6.14 -82.77 -0.51 -0.15 16 9 C -0.21 -0.04 9.94 -38.83 -0.39 -0.42 16 10 C 0.14 0.17 11.30 -17.24 -0.19 -0.03 16 11 N -0.52 -1.89 10.42 -14.64 -0.15 -2.04 16 12 C 0.29 1.02 12.27 -92.27 -1.13 -0.12 16 13 N -0.47 -1.75 6.43 -11.25 -0.07 -1.82 16 14 C -0.02 0.01 5.01 -13.90 -0.07 -0.06 16 15 N -0.62 -0.50 13.82 56.23 0.78 0.28 16 16 Si 0.93 -2.25 27.86 -169.99 -4.74 -6.99 16 17 H -0.23 0.43 7.11 56.52 0.40 0.83 16 18 H -0.24 0.38 7.11 56.52 0.40 0.78 16 19 H -0.23 0.88 5.82 56.52 0.33 1.21 16 20 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 21 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 22 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 23 H 0.11 0.32 7.58 -51.93 -0.39 -0.07 16 24 H 0.40 -0.96 4.99 -40.82 -0.20 -1.16 16 25 H 0.14 -0.63 8.06 -52.49 -0.42 -1.06 16 26 H 0.15 -0.69 8.06 -52.49 -0.42 -1.11 16 27 H 0.15 -0.46 8.06 -52.49 -0.42 -0.89 16 28 H 0.17 -0.32 8.06 -52.49 -0.42 -0.74 16 29 H 0.19 0.24 8.06 -52.48 -0.42 -0.18 16 30 H 0.34 -0.37 8.23 -40.82 -0.34 -0.70 16 LS Contribution 265.50 15.07 4.00 4.00 Total: 0.00 -7.29 265.50 -6.53 -13.83 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: -3.18 Total: -4.27 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.96 Total: -0.18 kcal Atomic # 7 Polarization: -4.03 SS G_CDS: 0.28 Total: -3.75 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.07 Total: -2.64 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: -4.74 Total: -6.99 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -7.29 -6.53 -13.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116772766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.666 kcal (2) G-P(sol) polarization free energy of solvation -7.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds