Wall clock time and date at job start Thu Apr 9 2020 12:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 119.99888 * 2 1 4 4 H 1.48508 * 109.46904 * 270.00445 * 3 2 1 5 5 H 1.48497 * 109.47017 * 30.00085 * 3 2 1 6 6 H 1.48493 * 109.47451 * 150.00353 * 3 2 1 7 7 C 1.38647 * 120.00597 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99292 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00745 * 179.97438 * 7 2 1 10 10 C 1.35754 * 117.00418 * 185.05222 * 9 7 2 11 11 C 1.38878 * 120.06608 * 354.47030 * 10 9 7 12 12 C 1.38100 * 119.92812 * 179.97438 * 11 10 9 13 13 C 1.38300 * 120.07119 * 359.96919 * 12 11 10 14 14 C 1.50695 * 119.93415 * 180.02562 * 13 12 11 15 15 N 1.46894 * 109.47185 * 90.00103 * 14 13 12 16 16 C 1.47485 * 110.99917 * 74.02908 * 15 14 13 17 17 C 1.53514 * 87.92989 * 138.70358 * 16 15 14 18 18 C 1.47476 * 111.00215 * 169.99842 * 15 14 13 19 19 C 1.38308 * 120.13466 * 0.28549 * 13 12 11 20 20 C 1.38102 * 120.06990 * 359.48469 * 19 13 12 21 21 H 0.97001 * 120.00585 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.03628 * 359.94532 * 11 10 9 23 23 H 1.07997 * 119.96291 * 179.97438 * 12 11 10 24 24 H 1.08999 * 109.47143 * 210.00604 * 14 13 12 25 25 H 1.09004 * 109.47189 * 330.00385 * 14 13 12 26 26 H 1.08999 * 113.47886 * 253.47098 * 16 15 14 27 27 H 1.09002 * 113.47399 * 23.93870 * 16 15 14 28 28 H 1.09004 * 114.16868 * 220.33089 * 17 16 15 29 29 H 1.09002 * 114.16927 * 87.62826 * 17 16 15 30 30 H 1.09003 * 113.48050 * 336.06701 * 18 15 14 31 31 H 1.09007 * 113.47702 * 106.46816 * 18 15 14 32 32 H 1.07996 * 119.96324 * 179.72245 * 19 13 12 33 33 H 1.07997 * 120.03353 * 180.26063 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4002 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.6999 7 6 2.0089 -1.2006 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3571 -1.2007 -0.0011 10 6 3.9735 -2.4055 -0.1081 11 6 3.2235 -3.5743 -0.0951 12 6 3.8533 -4.7984 -0.2047 13 6 5.2294 -4.8611 -0.3279 14 6 5.9135 -6.1985 -0.4479 15 7 6.0152 -6.5710 -1.8651 16 6 7.0525 -5.7753 -2.5477 17 6 7.4797 -7.0582 -3.2744 18 6 6.8835 -7.7501 -2.0407 19 6 5.9795 -3.6991 -0.3359 20 6 5.3551 -2.4717 -0.2314 21 1 -0.4851 0.8400 0.0004 22 1 2.1488 -3.5260 0.0011 23 1 3.2707 -5.7076 -0.1943 24 1 6.9123 -6.1357 -0.0160 25 1 5.3339 -6.9522 0.0852 26 1 6.6473 -5.0134 -3.2136 27 1 7.8141 -5.3844 -1.8728 28 1 8.5587 -7.1763 -3.3745 29 1 6.9360 -7.2492 -4.1997 30 1 7.5999 -7.8863 -1.2306 31 1 6.3349 -8.6623 -2.2758 32 1 7.0543 -3.7515 -0.4277 33 1 5.9411 -1.5646 -0.2419 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137114666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:57 Heat of formation + Delta-G solvation = 36.144321 kcal Electronic energy + Delta-G solvation = -15647.012916 eV Core-core repulsion = 13060.719340 eV Total energy + Delta-G solvation = -2586.293576 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.09453 -38.96726 -36.64531 -32.49899 -31.60807 -30.24069 -28.07285 -25.85491 -25.41242 -23.59135 -22.07886 -20.39036 -19.84822 -17.86863 -17.26687 -16.01976 -15.76322 -15.19597 -14.82593 -14.05448 -13.86990 -13.76945 -13.39000 -12.92058 -12.58953 -12.48942 -12.20853 -11.94944 -11.77824 -11.28033 -11.10464 -10.80983 -10.66766 -10.56340 -10.45568 -10.13802 -9.37357 -8.90103 -8.80173 -8.24123 -7.30680 -6.40847 -4.07495 2.14333 2.19892 3.22249 3.26000 3.40501 4.06554 4.24184 4.40543 4.55432 4.80240 4.86031 5.10067 5.11455 5.25572 5.33310 5.37759 5.56686 5.64715 5.67231 5.68085 5.81152 5.85263 6.07311 6.13473 6.28876 6.39351 6.57987 6.81227 7.02666 7.09744 7.27027 7.34750 7.62229 7.81398 8.04710 8.94433 9.56839 10.66853 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.052670 B = 0.005153 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.484118 B = 5432.264715 C = 5628.968766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.161 3.839 11 C -0.221 4.221 12 C -0.053 4.053 13 C -0.171 4.171 14 C 0.076 3.924 15 N -0.466 5.466 16 C 0.002 3.998 17 C -0.149 4.149 18 C -0.007 4.007 19 C -0.070 4.070 20 C -0.193 4.193 21 H 0.279 0.721 22 H 0.133 0.867 23 H 0.110 0.890 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.437 -11.061 -2.760 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.108 3.892 11 C -0.240 4.240 12 C -0.072 4.072 13 C -0.172 4.172 14 C -0.051 4.051 15 N -0.188 5.188 16 C -0.127 4.127 17 C -0.187 4.187 18 C -0.136 4.136 19 C -0.089 4.089 20 C -0.212 4.212 21 H 0.089 0.911 22 H 0.151 0.849 23 H 0.128 0.872 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.594 -10.687 -2.929 16.775 hybrid contribution 0.834 0.734 0.457 1.201 sum 13.429 -9.953 -2.472 16.897 Atomic orbital electron populations 1.69643 1.05566 1.28478 1.48082 1.24460 0.95019 0.98805 0.95690 0.86183 0.80311 0.81451 0.78958 1.19877 1.20775 1.18402 1.20777 0.76901 0.96658 1.52190 0.87613 1.83568 1.22622 1.25778 1.80328 1.19130 0.91696 0.85512 0.92834 1.21282 1.01123 0.91844 1.09776 1.20628 0.93385 0.96691 0.96482 1.19101 0.93824 0.93234 1.11082 1.21372 0.98644 0.95357 0.89774 1.69076 1.33856 1.03475 1.12388 1.23712 0.93919 0.97075 0.97960 1.23120 1.00553 0.96893 0.98090 1.23777 0.95715 0.96591 0.97515 1.20460 0.98005 0.91494 0.98918 1.20152 0.91986 0.97706 1.11370 0.91054 0.84938 0.87231 0.94179 0.90602 0.89782 0.91558 0.91025 0.89089 0.91729 0.90035 0.87444 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.96 55.48 0.77 -24.84 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 21.83 28.62 -169.99 -4.86 16.97 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.26 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.39 -11.12 9.95 30.88 0.31 -10.81 16 8 H 0.11 3.09 5.44 -52.48 -0.29 2.80 16 9 O -0.22 -5.84 8.59 0.04 0.00 -5.83 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.22 -4.89 9.17 -39.40 -0.36 -5.25 16 12 C -0.05 -1.00 9.69 -39.61 -0.38 -1.39 16 13 C -0.17 -2.92 5.18 -104.58 -0.54 -3.46 16 14 C 0.08 1.05 4.97 -4.98 -0.02 1.02 16 15 N -0.47 -6.22 6.40 -246.14 -1.58 -7.80 16 16 C 0.00 0.03 6.83 -7.55 -0.05 -0.02 16 17 C -0.15 -1.40 8.47 -26.20 -0.22 -1.62 16 18 C -0.01 -0.07 7.70 -7.56 -0.06 -0.13 16 19 C -0.07 -1.20 9.12 -39.61 -0.36 -1.57 16 20 C -0.19 -3.88 9.99 -39.40 -0.39 -4.27 16 21 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.13 3.08 5.64 -52.48 -0.30 2.78 16 23 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 24 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 25 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.73 7.36 -51.93 -0.38 0.35 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.58 7.77 -51.93 -0.40 0.18 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.11 1.53 7.71 -52.49 -0.40 1.13 16 33 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 278.61 15.07 4.20 4.20 Total: -1.00 -29.71 278.61 -8.17 -37.87 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.25 Total: 1.72 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.45 Total: -22.28 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: -0.80 Total: -32.64 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: 0.00 Total: -5.83 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.71 -8.17 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137114666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.016 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds