Wall clock time and date at job start Thu Apr 9 2020 12:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37096 * 120.00224 * 2 1 4 4 H 1.08000 * 120.00260 * 201.70850 * 3 2 1 5 5 C 1.38959 * 119.99977 * 21.71416 * 3 2 1 6 6 N 1.31411 * 119.99563 * 11.33097 * 5 3 2 7 7 Si 1.86797 * 119.99977 * 191.33509 * 5 3 2 8 8 H 1.48495 * 109.46978 * 85.07337 * 7 5 3 9 9 H 1.48500 * 109.46872 * 205.06931 * 7 5 3 10 10 H 1.48495 * 109.47413 * 325.06971 * 7 5 3 11 11 C 1.34776 * 119.99893 * 180.02562 * 2 1 3 12 12 O 1.21290 * 119.99868 * 179.97438 * 11 2 1 13 13 C 1.50695 * 119.99999 * 359.97438 * 11 2 1 14 14 C 1.53002 * 109.47374 * 179.97438 * 13 11 2 15 15 C 1.53774 * 113.61806 * 185.00135 * 14 13 11 16 16 C 1.53783 * 87.17476 * 220.06522 * 15 14 13 17 17 F 1.39898 * 113.61371 * 139.93834 * 16 15 14 18 18 F 1.39901 * 113.61369 * 270.84315 * 16 15 14 19 19 C 1.53784 * 87.07983 * 25.38885 * 16 15 14 20 20 H 1.09002 * 109.46794 * 272.17516 * 1 2 3 21 21 H 1.09002 * 109.46766 * 32.16747 * 1 2 3 22 22 H 1.08997 * 109.47164 * 152.17015 * 1 2 3 23 23 H 0.97002 * 119.99455 * 179.97438 * 6 5 3 24 24 H 1.09006 * 109.47194 * 60.00431 * 13 11 2 25 25 H 1.09001 * 109.47469 * 300.00317 * 13 11 2 26 26 H 1.09002 * 112.90898 * 316.26070 * 14 13 11 27 27 H 1.08992 * 113.61621 * 105.47456 * 15 14 13 28 28 H 1.09000 * 113.61612 * 334.65300 * 15 14 13 29 29 H 1.09003 * 113.61262 * 89.11995 * 19 16 15 30 30 H 1.09001 * 113.61350 * 219.93442 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2204 -0.3459 5 6 1.5297 2.3480 0.4452 6 7 0.3757 2.2777 1.0699 7 14 2.3356 4.0082 0.1557 8 1 1.9738 4.5049 -1.1962 9 1 1.8628 4.9733 1.1805 10 1 3.8105 3.8662 0.2526 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6353 -0.0018 15 6 1.7129 -5.0155 -0.1247 16 6 2.7375 -5.5178 0.9062 17 9 2.1986 -6.4022 1.8468 18 9 3.9241 -5.9881 0.3337 19 6 2.8280 -4.0664 1.4065 20 1 -0.3633 0.0390 1.0270 21 1 -0.3633 0.8699 -0.5471 22 1 -0.3633 -0.9088 -0.4797 23 1 -0.0574 3.0879 1.3810 24 1 0.7584 -2.5298 -0.8904 25 1 0.7590 -2.5302 0.8897 26 1 3.2061 -3.4861 -0.6966 27 1 1.8261 -5.4689 -1.1094 28 1 0.6844 -5.0373 0.2356 29 1 2.1045 -3.8273 2.1859 30 1 3.8412 -3.7541 1.6593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142762090.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:00 Heat of formation + Delta-G solvation = -112.578140 kcal Electronic energy + Delta-G solvation = -16545.464040 eV Core-core repulsion = 13398.491844 eV Total energy + Delta-G solvation = -3146.972196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.68406 -47.02758 -38.96140 -37.29863 -34.62171 -31.69246 -29.54213 -26.24547 -26.09940 -24.55100 -22.74937 -19.87309 -18.87687 -17.15400 -16.88530 -16.38264 -16.24141 -15.81691 -15.12764 -14.34384 -14.19780 -13.90175 -13.78527 -13.33679 -13.10918 -12.54888 -12.42265 -12.21641 -11.57435 -11.38020 -11.29283 -10.99061 -10.90102 -10.74552 -10.58314 -10.36393 -10.25944 -10.16392 -9.03332 -8.39211 -7.70214 -6.31910 -3.88213 3.16132 3.24375 3.29553 3.61248 3.87536 3.94359 4.11871 4.39250 4.49036 4.61017 5.01500 5.13980 5.52586 5.53966 5.57133 5.61298 5.70923 5.94087 6.05015 6.05381 6.14855 6.39150 6.55885 6.87519 7.21764 7.55875 8.12266 8.47974 9.18610 9.42946 9.98135 10.71603 Molecular weight = 233.10amu Principal moments of inertia in cm(-1) A = 0.056866 B = 0.005568 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.264600 B = 5027.497483 C = 5239.299646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.449 5.449 3 C -0.306 4.306 4 H 0.099 0.901 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.444 3.556 12 O -0.590 6.590 13 C -0.119 4.119 14 C -0.080 4.080 15 C -0.163 4.163 16 C 0.248 3.752 17 F -0.197 7.197 18 F -0.183 7.183 19 C -0.154 4.154 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.026 0.974 23 H 0.267 0.733 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -10.596 -1.264 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.232 3.768 12 O -0.475 6.475 13 C -0.159 4.159 14 C -0.098 4.098 15 C -0.201 4.201 16 C 0.212 3.788 17 F -0.178 7.178 18 F -0.163 7.163 19 C -0.192 4.192 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.800 -10.465 -1.165 10.683 hybrid contribution 0.166 0.722 0.053 0.743 sum -1.634 -9.743 -1.112 9.942 Atomic orbital electron populations 1.21515 0.81148 0.98799 1.01679 1.43622 1.05541 1.04882 1.62715 1.19671 0.99096 0.83807 1.40790 0.88370 1.25338 0.96500 1.00062 0.95487 1.70000 1.16854 1.29156 1.36499 0.85926 0.79610 0.81136 0.77944 1.20333 1.20969 1.19437 1.19995 0.88092 0.84804 0.83861 1.90510 1.13976 1.87138 1.55919 1.21476 0.97958 0.93345 1.03104 1.22132 0.98853 0.91894 0.96954 1.24201 0.99431 0.97072 0.99423 1.22259 0.82172 0.86542 0.87830 1.92979 1.85551 1.72586 1.66705 1.92996 1.48315 1.90214 1.84820 1.24155 1.05560 0.89884 0.99631 0.92473 0.91236 0.95535 0.92282 0.89870 0.89949 0.87095 0.89140 0.87166 0.87364 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.43 8.52 59.85 0.51 2.94 16 2 N -0.45 -11.28 3.02 -122.19 -0.37 -11.65 16 3 C -0.31 -8.46 9.31 -14.93 -0.14 -8.60 16 4 H 0.10 2.85 7.39 -52.49 -0.39 2.46 16 5 C 0.03 0.76 5.12 -17.46 -0.09 0.67 16 6 N -0.89 -23.38 10.56 55.50 0.59 -22.80 16 7 Si 0.93 20.68 29.57 -169.99 -5.03 15.65 16 8 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 C 0.44 10.37 7.63 -10.99 -0.08 10.28 16 12 O -0.59 -15.77 15.44 5.55 0.09 -15.68 16 13 C -0.12 -1.98 4.06 -27.88 -0.11 -2.09 16 14 C -0.08 -1.20 3.14 -89.72 -0.28 -1.48 16 15 C -0.16 -1.93 7.42 -25.92 -0.19 -2.12 16 16 C 0.25 3.41 3.28 -25.92 -0.08 3.33 16 17 F -0.20 -2.80 17.41 2.25 0.04 -2.76 16 18 F -0.18 -2.75 17.38 2.25 0.04 -2.71 16 19 C -0.15 -2.25 7.43 -25.83 -0.19 -2.45 16 20 H 0.06 1.28 7.56 -51.93 -0.39 0.89 16 21 H 0.07 1.60 7.00 -51.93 -0.36 1.24 16 22 H 0.03 0.46 6.36 -51.93 -0.33 0.13 16 23 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 24 H 0.08 1.22 7.41 -51.93 -0.38 0.83 16 25 H 0.08 1.26 7.81 -51.93 -0.41 0.85 16 26 H 0.11 1.87 7.68 -51.93 -0.40 1.47 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.11 1.11 8.10 -51.93 -0.42 0.69 16 29 H 0.11 1.46 7.90 -51.93 -0.41 1.05 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 262.40 15.07 3.95 3.95 Total: -1.00 -30.28 262.40 -4.83 -35.11 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.47 Total: 0.39 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.67 Total: 0.48 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.22 Total: -34.44 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.09 Total: -15.68 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.08 Total: -5.47 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.28 -4.83 -35.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142762090.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.465 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds