Wall clock time and date at job start Thu Apr 9 2020 12:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37096 * 120.00224 * 2 1 4 4 H 1.08000 * 120.00260 * 201.70850 * 3 2 1 5 5 C 1.38959 * 119.99977 * 21.71416 * 3 2 1 6 6 N 1.31411 * 119.99563 * 11.33097 * 5 3 2 7 7 Si 1.86797 * 119.99977 * 191.33509 * 5 3 2 8 8 H 1.48495 * 109.46978 * 85.07337 * 7 5 3 9 9 H 1.48500 * 109.46872 * 205.06931 * 7 5 3 10 10 H 1.48495 * 109.47413 * 325.06971 * 7 5 3 11 11 C 1.34776 * 119.99893 * 180.02562 * 2 1 3 12 12 O 1.21290 * 119.99868 * 179.97438 * 11 2 1 13 13 C 1.50695 * 119.99999 * 359.97438 * 11 2 1 14 14 C 1.53002 * 109.47374 * 179.97438 * 13 11 2 15 15 C 1.53774 * 113.61806 * 185.00135 * 14 13 11 16 16 C 1.53783 * 87.17476 * 220.06522 * 15 14 13 17 17 F 1.39898 * 113.61371 * 139.93834 * 16 15 14 18 18 F 1.39901 * 113.61369 * 270.84315 * 16 15 14 19 19 C 1.53784 * 87.07983 * 25.38885 * 16 15 14 20 20 H 1.09002 * 109.46794 * 272.17516 * 1 2 3 21 21 H 1.09002 * 109.46766 * 32.16747 * 1 2 3 22 22 H 1.08997 * 109.47164 * 152.17015 * 1 2 3 23 23 H 0.97002 * 119.99455 * 179.97438 * 6 5 3 24 24 H 1.09006 * 109.47194 * 60.00431 * 13 11 2 25 25 H 1.09001 * 109.47469 * 300.00317 * 13 11 2 26 26 H 1.09002 * 112.90898 * 316.26070 * 14 13 11 27 27 H 1.08992 * 113.61621 * 105.47456 * 15 14 13 28 28 H 1.09000 * 113.61612 * 334.65300 * 15 14 13 29 29 H 1.09003 * 113.61262 * 89.11995 * 19 16 15 30 30 H 1.09001 * 113.61350 * 219.93442 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2204 -0.3459 5 6 1.5297 2.3480 0.4452 6 7 0.3757 2.2777 1.0699 7 14 2.3356 4.0082 0.1557 8 1 1.9738 4.5049 -1.1962 9 1 1.8628 4.9733 1.1805 10 1 3.8105 3.8662 0.2526 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6353 -0.0018 15 6 1.7129 -5.0155 -0.1247 16 6 2.7375 -5.5178 0.9062 17 9 2.1986 -6.4022 1.8468 18 9 3.9241 -5.9881 0.3337 19 6 2.8280 -4.0664 1.4065 20 1 -0.3633 0.0390 1.0270 21 1 -0.3633 0.8699 -0.5471 22 1 -0.3633 -0.9088 -0.4797 23 1 -0.0574 3.0879 1.3810 24 1 0.7584 -2.5298 -0.8904 25 1 0.7590 -2.5302 0.8897 26 1 3.2061 -3.4861 -0.6966 27 1 1.8261 -5.4689 -1.1094 28 1 0.6844 -5.0373 0.2356 29 1 2.1045 -3.8273 2.1859 30 1 3.8412 -3.7541 1.6593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142762090.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:59 Heat of formation + Delta-G solvation = -130.935969 kcal Electronic energy + Delta-G solvation = -16546.260095 eV Core-core repulsion = 13398.491844 eV Total energy + Delta-G solvation = -3147.768251 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.097 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.79448 -48.14175 -40.58503 -38.67919 -36.55098 -33.65898 -31.00153 -28.06847 -27.14382 -26.34726 -24.10481 -21.15450 -20.42940 -18.85348 -18.31506 -17.83724 -17.44928 -17.15547 -16.74181 -16.08102 -15.95362 -15.32362 -15.01291 -14.46095 -14.40479 -14.07291 -13.90531 -13.44241 -13.32677 -13.07321 -13.01377 -12.65379 -12.39955 -12.21871 -12.07419 -11.95715 -11.69178 -11.32068 -10.99188 -10.28026 -9.66237 -8.30767 -5.95493 1.38094 1.41161 1.52483 2.09363 2.28809 2.54845 2.85482 3.08048 3.12162 3.33494 3.46396 3.58863 4.12998 4.31409 4.48061 4.56527 4.62974 4.66112 4.73435 4.87073 4.91022 4.97342 5.12522 5.38218 5.45985 5.46382 6.12396 6.51918 7.20722 7.53854 8.09217 8.70225 Molecular weight = 233.10amu Principal moments of inertia in cm(-1) A = 0.056866 B = 0.005568 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.264600 B = 5027.497483 C = 5239.299646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.469 5.469 3 C -0.344 4.344 4 H 0.069 0.931 5 C -0.004 4.004 6 N -0.898 5.898 7 Si 0.987 3.013 8 H -0.266 1.266 9 H -0.273 1.273 10 H -0.278 1.278 11 C 0.434 3.566 12 O -0.635 6.635 13 C -0.105 4.105 14 C -0.086 4.086 15 C -0.136 4.136 16 C 0.245 3.755 17 F -0.198 7.198 18 F -0.194 7.194 19 C -0.162 4.162 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.272 0.728 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.122 0.878 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -11.387 -1.555 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.188 5.188 3 C -0.472 4.472 4 H 0.087 0.913 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.811 3.189 8 H -0.191 1.191 9 H -0.198 1.198 10 H -0.204 1.204 11 C 0.225 3.775 12 O -0.523 6.523 13 C -0.145 4.145 14 C -0.105 4.105 15 C -0.174 4.174 16 C 0.209 3.791 17 F -0.179 7.179 18 F -0.175 7.175 19 C -0.200 4.200 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.094 0.906 23 H 0.082 0.918 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.158 0.842 29 H 0.140 0.860 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.535 -11.269 -1.456 11.900 hybrid contribution 0.739 0.947 0.181 1.215 sum -2.796 -10.322 -1.275 10.770 Atomic orbital electron populations 1.21475 0.79167 1.00347 1.01190 1.43923 1.06904 1.04778 1.63205 1.19597 0.98714 0.86027 1.42865 0.91338 1.26033 0.97038 1.02679 0.94757 1.70070 1.17304 1.30155 1.36148 0.85045 0.78091 0.77276 0.78516 1.19114 1.19795 1.20363 1.21210 0.88051 0.86524 0.81754 1.90479 1.16373 1.88129 1.57301 1.21466 0.97941 0.89465 1.05603 1.22034 0.98471 0.93377 0.96663 1.24133 0.99875 0.93494 0.99865 1.22342 0.82505 0.85753 0.88462 1.92978 1.85452 1.72530 1.66923 1.92977 1.49269 1.90283 1.84949 1.24245 1.04802 0.90959 1.00031 0.93613 0.93221 0.90649 0.91813 0.86735 0.87584 0.89588 0.87186 0.84179 0.85980 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.07 8.52 127.77 1.09 6.16 16 2 N -0.47 -23.60 3.02 -658.89 -1.99 -25.59 16 3 C -0.34 -19.51 9.31 84.04 0.78 -18.72 16 4 H 0.07 4.19 7.39 -2.91 -0.02 4.16 16 5 C 0.00 -0.19 5.12 84.93 0.43 0.24 16 6 N -0.90 -47.11 10.56 21.67 0.23 -46.88 16 7 Si 0.99 42.54 29.57 68.60 2.03 44.57 16 8 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 C 0.43 20.20 7.63 87.66 0.67 20.86 16 12 O -0.63 -34.95 15.44 -3.06 -0.05 -35.00 16 13 C -0.11 -3.21 4.06 29.85 0.12 -3.09 16 14 C -0.09 -2.45 3.14 -10.21 -0.03 -2.48 16 15 C -0.14 -2.69 7.42 31.12 0.23 -2.46 16 16 C 0.25 6.24 3.28 31.12 0.10 6.34 16 17 F -0.20 -5.13 17.41 44.97 0.78 -4.34 16 18 F -0.19 -5.64 17.38 44.97 0.78 -4.86 16 19 C -0.16 -4.57 7.43 31.18 0.23 -4.33 16 20 H 0.05 1.99 7.56 -2.39 -0.02 1.98 16 21 H 0.05 2.24 7.00 -2.39 -0.02 2.23 16 22 H 0.08 2.36 6.36 -2.39 -0.02 2.34 16 23 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 24 H 0.11 2.82 7.41 -2.38 -0.02 2.80 16 25 H 0.11 2.80 7.81 -2.39 -0.02 2.78 16 26 H 0.09 2.89 7.68 -2.39 -0.02 2.87 16 27 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.14 2.01 8.10 -2.39 -0.02 1.99 16 29 H 0.12 3.05 7.90 -2.39 -0.02 3.03 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -67.51 262.40 6.56 -60.95 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.15 Total: 8.65 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 3.63 Total: 2.52 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.76 Total: -72.48 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.05 Total: -35.00 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 1.56 Total: -9.21 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -67.51 6.56 -60.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142762090.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.987 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds