Wall clock time and date at job start Thu Apr 9 2020 12:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35620 * 116.99905 * 2 1 4 4 C 1.39151 * 120.50531 * 0.23806 * 3 2 1 5 5 C 1.38306 * 118.62672 * 180.26233 * 4 3 2 6 6 C 1.39942 * 119.59824 * 359.74602 * 5 4 3 7 7 N 1.38900 * 119.49723 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.47194 * 109.47235 * 179.97438 * 8 7 6 10 10 N 8.82160 * 113.35155 * 359.81977 * 2 1 3 11 11 N 1.31865 * 121.00471 * 359.97438 * 6 5 4 12 12 C 1.33830 * 121.47224 * 0.02562 * 11 6 5 13 13 C 1.40915 * 119.84717 * 179.97438 * 12 11 6 14 14 H 1.08002 * 120.00197 * 180.02562 * 13 12 11 15 15 C 1.40028 * 119.99903 * 359.71557 * 13 12 11 16 16 N 1.30774 * 120.00278 * 0.28207 * 15 13 12 17 17 Si 1.86803 * 119.99845 * 180.27649 * 15 13 12 18 18 H 1.48504 * 109.47118 * 60.00518 * 17 15 13 19 19 H 1.48504 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47374 * 300.00624 * 17 15 13 21 21 H 1.09000 * 109.47271 * 300.00195 * 1 2 3 22 22 H 1.09007 * 109.46926 * 59.99721 * 1 2 3 23 23 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 24 24 H 1.07999 * 120.68585 * 359.97438 * 4 3 2 25 25 H 1.08004 * 120.19983 * 179.71996 * 5 4 3 26 26 H 0.97007 * 119.99763 * 180.02562 * 7 6 5 27 27 H 1.08997 * 109.46601 * 299.99887 * 8 7 6 28 28 H 1.08997 * 109.46669 * 59.99569 * 8 7 6 29 29 H 0.96996 * 120.00391 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0050 5 6 1.9650 3.5931 -0.0008 6 6 3.3643 3.6107 -0.0060 7 7 4.0330 4.8282 -0.0123 8 6 3.2736 6.0810 -0.0129 9 6 4.2060 7.2200 -0.0194 10 7 4.9256 8.0990 -0.0255 11 7 4.0578 2.4891 -0.0050 12 6 3.4543 1.2946 0.0005 13 6 4.2291 0.1175 0.0009 14 1 3.7447 -0.8478 0.0049 15 6 5.6269 0.1994 -0.0105 16 7 6.2135 1.3682 -0.0159 17 14 6.6538 -1.3610 -0.0179 18 1 6.3314 -2.1601 -1.2274 19 1 8.0954 -1.0048 -0.0292 20 1 6.3510 -2.1587 1.1975 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.2177 2.3479 0.0085 25 1 1.4100 4.5196 -0.0017 26 1 5.0028 4.8489 -0.0163 27 1 2.6423 6.1227 -0.9004 28 1 2.6494 6.1279 0.8795 29 1 7.1818 1.4249 -0.0235 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:08 Heat of formation + Delta-G solvation = 38.360450 kcal Electronic energy + Delta-G solvation = -15500.070479 eV Core-core repulsion = 12810.332657 eV Total energy + Delta-G solvation = -2689.737821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.090 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.90718 -37.34983 -36.44498 -34.60961 -33.17267 -30.36004 -29.40783 -26.92191 -26.16473 -24.98179 -21.62700 -20.53118 -18.12387 -17.48660 -16.53039 -15.97938 -15.29675 -14.96484 -14.70181 -14.61845 -14.24443 -13.26970 -12.95170 -12.65730 -12.52282 -12.50120 -12.02806 -11.83115 -11.63244 -11.23326 -11.18043 -10.63004 -10.47891 -10.47760 -9.85261 -9.49250 -8.58465 -8.07146 -7.73528 -6.42002 -6.41653 -4.40085 2.56086 2.77052 2.79685 3.08173 3.11086 3.14338 3.25125 3.90435 3.97487 4.30899 4.60553 4.77204 5.51152 5.53194 5.78158 5.78695 5.94482 5.95401 6.06423 6.32859 6.57658 6.72036 7.15069 7.19283 7.37714 7.51387 7.62568 8.09072 8.22435 8.34964 8.53505 8.74763 9.10886 10.10976 10.30994 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.008981 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.736112 B = 3117.006231 C = 4598.282348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.072 4.072 4 C -0.114 4.114 5 C -0.348 4.348 6 C 0.394 3.606 7 N -0.738 5.738 8 C 0.237 3.763 9 C 0.208 3.792 10 N -0.429 5.429 11 N -0.512 5.512 12 C 0.289 3.711 13 C -0.410 4.410 14 H 0.092 0.908 15 C 0.068 3.932 16 N -0.713 5.713 17 Si 0.909 3.091 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.264 1.264 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.402 0.598 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 1.607 0.004 6.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.225 6.225 3 C -0.120 4.120 4 C -0.138 4.138 5 C -0.374 4.374 6 C 0.157 3.843 7 N -0.379 5.379 8 C 0.109 3.891 9 C -0.111 4.111 10 N -0.107 5.107 11 N -0.234 5.234 12 C 0.161 3.839 13 C -0.442 4.442 14 H 0.110 0.890 15 C -0.158 4.158 16 N -0.334 5.334 17 Si 0.733 3.267 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.237 0.763 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.042 2.962 -0.010 5.012 hybrid contribution -0.716 -0.698 -0.002 1.000 sum -4.759 2.264 -0.012 5.270 Atomic orbital electron populations 1.22699 0.82090 1.01579 0.99700 1.85926 1.17920 1.27865 1.90817 1.20044 0.93411 0.83210 1.15302 1.20667 0.97386 0.92295 1.03475 1.20330 0.92483 0.96569 1.28044 1.18295 0.87568 0.86115 0.92318 1.43790 1.08121 1.00602 1.85406 1.18445 0.89547 0.76958 1.04163 1.29325 0.94350 0.94778 0.92598 1.81190 1.08400 1.11527 1.09597 1.68316 1.34829 0.94940 1.25308 1.17725 0.85049 0.90863 0.90283 1.19537 0.90552 0.93174 1.40916 0.89018 1.26085 0.98773 0.97208 0.93728 1.70133 1.10430 1.24580 1.28282 0.86361 0.78302 0.82018 0.80000 1.18893 1.20365 1.18893 0.94422 0.94429 0.90168 0.88075 0.88635 0.76294 0.88418 0.88426 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.83 101.05 0.99 1.58 15 2 O -0.31 -6.99 9.61 -18.56 -0.18 -7.17 15 3 C -0.07 -1.75 6.74 -38.11 -0.26 -2.00 15 4 C -0.11 -2.44 9.12 -39.22 -0.36 -2.80 15 5 C -0.35 -7.18 9.33 -38.92 -0.36 -7.54 15 6 C 0.39 8.81 7.65 -155.27 -1.19 7.62 15 7 N -0.74 -13.29 5.71 -63.22 -0.36 -13.65 15 8 C 0.24 3.04 5.35 -6.83 -0.04 3.00 15 9 C 0.21 2.86 15.55 -20.76 -0.32 2.54 15 10 N -0.43 -6.84 18.54 42.15 0.78 -6.06 15 11 N -0.51 -13.39 7.88 -10.20 -0.08 -13.47 15 12 C 0.29 7.76 6.56 -84.85 -0.56 7.20 15 13 C -0.41 -10.91 8.94 -37.90 -0.34 -11.25 15 14 H 0.09 2.37 7.31 -52.49 -0.38 1.99 15 15 C 0.07 1.69 5.50 -17.33 -0.10 1.59 15 16 N -0.71 -18.37 11.45 55.55 0.64 -17.74 15 17 Si 0.91 18.50 29.56 -169.99 -5.02 13.48 15 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 21 H 0.04 0.57 7.68 -51.93 -0.40 0.17 15 22 H 0.04 0.57 7.70 -51.92 -0.40 0.17 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 15 24 H 0.10 1.86 6.43 -52.49 -0.34 1.53 15 25 H 0.10 1.62 6.67 -52.48 -0.35 1.27 15 26 H 0.40 7.51 8.57 -40.82 -0.35 7.16 15 27 H 0.10 1.08 7.91 -51.93 -0.41 0.67 15 28 H 0.10 1.08 7.92 -51.93 -0.41 0.67 15 29 H 0.27 6.41 8.29 -40.82 -0.34 6.07 15 LS Contribution 265.25 15.07 4.00 4.00 Total: -1.00 -29.94 265.25 -5.35 -35.29 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -2.60 Total: 5.39 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.52 Total: -0.05 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.98 Total: -50.92 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.18 Total: -7.17 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.94 -5.35 -35.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.648 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds