Wall clock time and date at job start Thu Apr 9 2020 12:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35620 * 116.99905 * 2 1 4 4 C 1.39151 * 120.50531 * 0.23806 * 3 2 1 5 5 C 1.38306 * 118.62672 * 180.26233 * 4 3 2 6 6 C 1.39942 * 119.59824 * 359.74602 * 5 4 3 7 7 N 1.38900 * 119.49723 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.47194 * 109.47235 * 179.97438 * 8 7 6 10 10 N 8.82160 * 113.35155 * 359.81977 * 2 1 3 11 11 N 1.31865 * 121.00471 * 359.97438 * 6 5 4 12 12 C 1.33830 * 121.47224 * 0.02562 * 11 6 5 13 13 C 1.40915 * 119.84717 * 179.97438 * 12 11 6 14 14 H 1.08002 * 120.00197 * 180.02562 * 13 12 11 15 15 C 1.40028 * 119.99903 * 359.71557 * 13 12 11 16 16 N 1.30774 * 120.00278 * 0.28207 * 15 13 12 17 17 Si 1.86803 * 119.99845 * 180.27649 * 15 13 12 18 18 H 1.48504 * 109.47118 * 60.00518 * 17 15 13 19 19 H 1.48504 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47374 * 300.00624 * 17 15 13 21 21 H 1.09000 * 109.47271 * 300.00195 * 1 2 3 22 22 H 1.09007 * 109.46926 * 59.99721 * 1 2 3 23 23 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 24 24 H 1.07999 * 120.68585 * 359.97438 * 4 3 2 25 25 H 1.08004 * 120.19983 * 179.71996 * 5 4 3 26 26 H 0.97007 * 119.99763 * 180.02562 * 7 6 5 27 27 H 1.08997 * 109.46601 * 299.99887 * 8 7 6 28 28 H 1.08997 * 109.46669 * 59.99569 * 8 7 6 29 29 H 0.96996 * 120.00391 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0050 5 6 1.9650 3.5931 -0.0008 6 6 3.3643 3.6107 -0.0060 7 7 4.0330 4.8282 -0.0123 8 6 3.2736 6.0810 -0.0129 9 6 4.2060 7.2200 -0.0194 10 7 4.9256 8.0990 -0.0255 11 7 4.0578 2.4891 -0.0050 12 6 3.4543 1.2946 0.0005 13 6 4.2291 0.1175 0.0009 14 1 3.7447 -0.8478 0.0049 15 6 5.6269 0.1994 -0.0105 16 7 6.2135 1.3682 -0.0159 17 14 6.6538 -1.3610 -0.0179 18 1 6.3314 -2.1601 -1.2274 19 1 8.0954 -1.0048 -0.0292 20 1 6.3510 -2.1587 1.1975 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.2177 2.3479 0.0085 25 1 1.4100 4.5196 -0.0017 26 1 5.0028 4.8489 -0.0163 27 1 2.6423 6.1227 -0.9004 28 1 2.6494 6.1279 0.8795 29 1 7.1818 1.4249 -0.0235 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182325.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:07 Heat of formation + Delta-G solvation = 18.218411 kcal Electronic energy + Delta-G solvation = -15500.943903 eV Core-core repulsion = 12810.332657 eV Total energy + Delta-G solvation = -2690.611245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.090 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57752 -38.79493 -37.81435 -36.15938 -34.84292 -32.10033 -30.99887 -28.25160 -27.77237 -26.55803 -23.35974 -22.17550 -19.56516 -19.12931 -18.11395 -17.58232 -16.82694 -16.33795 -16.20836 -15.98383 -15.65495 -14.85660 -14.45286 -14.19092 -14.03815 -13.81377 -13.31616 -13.19165 -13.15971 -12.85546 -12.76400 -12.43126 -12.04729 -11.91380 -11.51758 -11.22396 -10.10731 -9.84372 -9.51157 -8.21204 -8.07601 -6.26059 1.06420 1.34758 1.38110 1.44551 1.55592 1.61340 1.69033 2.29130 2.73886 2.96497 2.98879 3.17249 4.03738 4.37119 4.51302 4.54460 4.60026 4.61743 4.74730 4.83880 4.96083 4.99577 5.37354 5.57341 5.75482 5.92316 6.30225 6.39710 6.47562 6.73242 6.85793 6.97674 7.38959 8.34635 8.53054 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.008981 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.736112 B = 3117.006231 C = 4598.282348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C -0.098 4.098 4 C -0.112 4.112 5 C -0.331 4.331 6 C 0.376 3.624 7 N -0.739 5.739 8 C 0.238 3.762 9 C 0.233 3.767 10 N -0.468 5.468 11 N -0.545 5.545 12 C 0.253 3.747 13 C -0.454 4.454 14 H 0.082 0.918 15 C 0.028 3.972 16 N -0.750 5.750 17 Si 0.980 3.020 18 H -0.262 1.262 19 H -0.269 1.269 20 H -0.262 1.262 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.107 0.893 24 H 0.136 0.864 25 H 0.142 0.858 26 H 0.395 0.605 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 2.324 0.003 8.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.357 4.357 6 C 0.138 3.862 7 N -0.378 5.378 8 C 0.112 3.888 9 C -0.085 4.085 10 N -0.147 5.147 11 N -0.268 5.268 12 C 0.125 3.875 13 C -0.487 4.487 14 H 0.100 0.900 15 C -0.194 4.194 16 N -0.373 5.373 17 Si 0.801 3.199 18 H -0.186 1.186 19 H -0.193 1.193 20 H -0.186 1.186 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.125 0.875 24 H 0.154 0.846 25 H 0.160 0.840 26 H 0.229 0.771 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.791 3.727 -0.011 6.887 hybrid contribution -0.396 -0.773 -0.001 0.868 sum -6.187 2.955 -0.012 6.857 Atomic orbital electron populations 1.23027 0.79066 1.03892 1.00745 1.85861 1.21090 1.27524 1.91003 1.20117 0.93139 0.84819 1.16489 1.21114 0.99146 0.91581 1.01796 1.20846 0.91966 0.98235 1.24622 1.18684 0.88752 0.86469 0.92257 1.43912 1.08128 1.01035 1.84693 1.18825 0.88967 0.74127 1.06880 1.29376 0.93577 0.94271 0.91266 1.81228 1.09328 1.12953 1.11179 1.68213 1.36623 0.95962 1.26050 1.18100 0.86860 0.91359 0.91177 1.19699 0.91836 0.93168 1.43983 0.89958 1.26842 0.99287 1.00384 0.92846 1.70217 1.10715 1.26453 1.29927 0.85300 0.76820 0.77910 0.79878 1.18632 1.19317 1.18622 0.93194 0.93213 0.87483 0.84600 0.83991 0.77120 0.85441 0.85448 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.83 113.37 1.11 1.97 15 2 O -0.34 -15.26 9.61 -89.32 -0.86 -16.12 15 3 C -0.10 -4.75 6.74 23.22 0.16 -4.59 15 4 C -0.11 -4.51 9.12 22.51 0.21 -4.31 15 5 C -0.33 -12.51 9.33 22.70 0.21 -12.30 15 6 C 0.38 16.31 7.65 133.45 1.02 17.33 15 7 N -0.74 -25.23 5.71 -353.94 -2.02 -27.25 15 8 C 0.24 5.20 5.35 84.57 0.45 5.65 15 9 C 0.23 5.85 15.55 89.44 1.39 7.24 15 10 N -0.47 -14.27 18.54 20.00 0.37 -13.90 15 11 N -0.55 -29.07 7.88 -186.18 -1.47 -30.53 15 12 C 0.25 14.02 6.56 40.23 0.26 14.28 15 13 C -0.45 -25.31 8.94 23.36 0.21 -25.10 15 14 H 0.08 4.50 7.31 -2.91 -0.02 4.48 15 15 C 0.03 1.44 5.50 85.28 0.47 1.91 15 16 N -0.75 -40.13 11.45 21.84 0.25 -39.88 15 17 Si 0.98 39.15 29.56 68.60 2.03 41.18 15 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 19 H -0.27 -10.14 7.11 99.48 0.71 -9.44 15 20 H -0.26 -10.20 7.11 99.48 0.71 -9.50 15 21 H 0.05 1.38 7.68 -2.39 -0.02 1.37 15 22 H 0.05 1.38 7.70 -2.38 -0.02 1.36 15 23 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 24 H 0.14 4.43 6.43 -2.91 -0.02 4.41 15 25 H 0.14 3.96 6.67 -2.91 -0.02 3.95 15 26 H 0.39 14.59 8.57 -92.70 -0.79 13.80 15 27 H 0.13 2.17 7.91 -2.39 -0.02 2.15 15 28 H 0.13 2.17 7.92 -2.39 -0.02 2.15 15 29 H 0.28 13.44 8.29 -92.71 -0.77 12.67 15 Total: -1.00 -68.11 265.25 4.20 -63.91 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.40 Total: 20.50 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.49 Total: 2.10 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -2.86 Total: -111.57 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.86 Total: -16.12 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -68.11 4.20 -63.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182325.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.127 kcal (2) G-P(sol) polarization free energy of solvation -68.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds