Wall clock time and date at job start Thu Apr 9 2020 12:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48502 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46990 * 299.99933 * 3 2 1 6 6 H 1.48494 * 109.47445 * 60.00287 * 3 2 1 7 7 C 1.37881 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99471 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47222 * 179.97438 * 9 7 2 11 11 C 1.38835 * 120.35227 * 269.97780 * 10 9 7 12 12 C 1.38386 * 118.48107 * 179.75292 * 11 10 9 13 13 C 1.38923 * 119.11143 * 0.50369 * 12 11 10 14 14 O 1.35671 * 119.68304 * 179.75767 * 13 12 11 15 15 C 1.42895 * 117.00096 * 179.73239 * 14 13 12 16 16 C 1.53003 * 109.47298 * 180.02562 * 15 14 13 17 17 C 1.53001 * 117.51964 * 116.28202 * 16 15 14 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 15 19 19 N 1.32243 * 120.63052 * 359.48626 * 13 12 11 20 20 C 1.31971 * 121.64986 * 0.26879 * 19 13 12 21 21 H 0.97005 * 119.99542 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47547 * 59.99776 * 9 7 2 23 23 H 1.08999 * 109.47365 * 299.99744 * 9 7 2 24 24 H 1.07995 * 120.75722 * 0.02562 * 11 10 9 25 25 H 1.08000 * 120.44138 * 180.26594 * 12 11 10 26 26 H 1.08999 * 109.47440 * 59.99506 * 15 14 13 27 27 H 1.09005 * 109.46905 * 299.99665 * 15 14 13 28 28 H 1.09002 * 115.54973 * 330.57985 * 16 15 14 29 29 H 1.09001 * 117.49733 * 214.97413 * 17 16 15 30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 32 32 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 33 33 H 1.07998 * 119.57972 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6856 -4.1782 -1.1975 12 6 3.5883 -5.2262 -1.1523 13 6 3.9976 -5.7129 0.0828 14 8 4.8784 -6.7432 0.1406 15 6 5.2647 -7.1943 1.4403 16 6 6.2555 -8.3523 1.3046 17 6 7.6724 -8.1368 1.8401 18 6 6.7028 -9.0534 2.5889 19 7 3.5410 -5.1780 1.2027 20 6 2.6835 -4.1749 1.1917 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.3466 -3.7816 -2.1431 25 1 3.9665 -5.6623 -2.0651 26 1 4.3829 -7.5320 1.9847 27 1 5.7359 -6.3754 1.9839 28 1 6.1433 -8.9646 0.4098 29 1 8.4924 -8.6073 1.2976 30 1 7.8991 -7.1698 2.2889 31 1 6.2915 -8.6895 3.5304 32 1 6.8849 -10.1270 2.5389 33 1 2.3326 -3.7632 2.1265 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:16 Heat of formation + Delta-G solvation = 7.852360 kcal Electronic energy + Delta-G solvation = -15222.034821 eV Core-core repulsion = 12634.514414 eV Total energy + Delta-G solvation = -2587.520408 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08646 -38.19282 -36.67532 -33.55916 -31.90779 -30.93660 -27.89232 -26.51352 -23.48505 -22.98997 -22.58829 -20.84595 -20.68523 -18.07567 -16.61550 -16.37165 -15.86422 -15.27274 -14.89644 -14.39395 -14.10679 -13.68710 -13.15113 -13.06843 -12.48468 -12.30629 -11.78645 -11.65242 -11.37921 -11.30753 -11.03137 -10.76292 -10.68784 -10.59589 -10.04933 -9.81959 -9.56191 -9.12788 -8.97715 -8.46726 -7.64460 -6.09382 -4.13976 1.76440 1.97124 3.18388 3.26705 3.34727 3.39685 3.66022 4.33478 4.49193 4.60258 4.70302 4.75931 4.94343 5.16472 5.25132 5.40720 5.52953 5.59239 5.64502 5.66518 5.68207 5.75725 5.89087 5.97403 6.14814 6.24904 6.69756 6.89218 7.08801 7.46168 7.63264 7.73531 7.85899 8.24659 8.42726 8.91381 9.50693 11.00089 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.045247 B = 0.004485 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.675861 B = 6242.013616 C = 6458.445029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.056 3.944 10 C -0.115 4.115 11 C -0.050 4.050 12 C -0.189 4.189 13 C 0.285 3.715 14 O -0.312 6.312 15 C 0.106 3.894 16 C -0.156 4.156 17 C -0.178 4.178 18 C -0.171 4.171 19 N -0.542 5.542 20 C 0.124 3.876 21 H 0.262 0.738 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.137 0.863 25 H 0.130 0.870 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 -14.050 1.866 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.117 4.117 11 C -0.076 4.076 12 C -0.210 4.210 13 C 0.107 3.893 14 O -0.221 6.221 15 C 0.030 3.970 16 C -0.175 4.175 17 C -0.215 4.215 18 C -0.208 4.208 19 N -0.265 5.265 20 C -0.030 4.030 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.155 0.845 25 H 0.148 0.852 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.989 -14.427 2.462 17.719 hybrid contribution 0.156 1.351 -0.587 1.481 sum 10.145 -13.076 1.876 16.656 Atomic orbital electron populations 1.69965 1.06025 1.26820 1.50328 1.25009 0.94886 0.99290 0.95053 0.86478 0.80129 0.83429 0.77684 1.19695 1.20901 1.20871 1.21103 0.93063 0.89873 1.51255 0.92473 1.18237 0.92204 0.89035 0.98670 1.21528 0.99613 0.97955 0.92587 1.21379 0.93912 0.93025 0.99274 1.20956 1.02990 1.00911 0.96115 1.19600 0.90713 0.88736 0.90300 1.86127 1.58109 1.46860 1.31008 1.21967 0.96965 0.94716 0.83366 1.22180 0.96002 1.00166 0.99102 1.23090 0.93011 1.01521 1.03844 1.22970 1.03550 0.98681 0.95613 1.67223 1.15307 1.14155 1.29842 1.22303 0.91793 0.90321 0.98608 0.92813 0.95104 0.95020 0.84521 0.85181 0.91534 0.91784 0.86869 0.88618 0.88520 0.88460 0.88387 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.05 9.09 -34.44 -0.31 -14.36 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.39 5.13 -29.04 -0.15 1.24 16 10 C -0.11 -2.44 5.09 -104.47 -0.53 -2.97 16 11 C -0.05 -0.95 9.85 -39.31 -0.39 -1.34 16 12 C -0.19 -3.31 10.04 -39.27 -0.39 -3.70 16 13 C 0.28 5.24 7.49 -17.12 -0.13 5.11 16 14 O -0.31 -5.16 10.12 -18.72 -0.19 -5.35 16 15 C 0.11 1.45 5.59 37.16 0.21 1.66 16 16 C -0.16 -1.69 6.06 -90.61 -0.55 -2.24 16 17 C -0.18 -1.65 10.18 -26.73 -0.27 -1.92 16 18 C -0.17 -1.48 10.25 -26.73 -0.27 -1.75 16 19 N -0.54 -10.44 9.22 -13.33 -0.12 -10.56 16 20 C 0.12 2.49 10.85 -17.56 -0.19 2.30 16 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 23 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 24 H 0.14 2.38 8.06 -52.49 -0.42 1.96 16 25 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 26 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 27 H 0.06 0.91 7.84 -51.93 -0.41 0.50 16 28 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.10 0.91 8.03 -51.93 -0.42 0.49 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.16 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 291.50 15.07 4.39 4.39 Total: -1.00 -29.45 291.50 -7.87 -37.32 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.59 Total: -0.50 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -3.08 Total: -16.44 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.61 Total: -35.60 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.19 Total: -5.35 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.45 -7.87 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.171 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds