Wall clock time and date at job start Thu Apr 9 2020 12:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48502 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46990 * 299.99933 * 3 2 1 6 6 H 1.48494 * 109.47445 * 60.00287 * 3 2 1 7 7 C 1.37881 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99471 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47222 * 179.97438 * 9 7 2 11 11 C 1.38835 * 120.35227 * 269.97780 * 10 9 7 12 12 C 1.38386 * 118.48107 * 179.75292 * 11 10 9 13 13 C 1.38923 * 119.11143 * 0.50369 * 12 11 10 14 14 O 1.35671 * 119.68304 * 179.75767 * 13 12 11 15 15 C 1.42895 * 117.00096 * 179.73239 * 14 13 12 16 16 C 1.53003 * 109.47298 * 180.02562 * 15 14 13 17 17 C 1.53001 * 117.51964 * 116.28202 * 16 15 14 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 15 19 19 N 1.32243 * 120.63052 * 359.48626 * 13 12 11 20 20 C 1.31971 * 121.64986 * 0.26879 * 19 13 12 21 21 H 0.97005 * 119.99542 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47547 * 59.99776 * 9 7 2 23 23 H 1.08999 * 109.47365 * 299.99744 * 9 7 2 24 24 H 1.07995 * 120.75722 * 0.02562 * 11 10 9 25 25 H 1.08000 * 120.44138 * 180.26594 * 12 11 10 26 26 H 1.08999 * 109.47440 * 59.99506 * 15 14 13 27 27 H 1.09005 * 109.46905 * 299.99665 * 15 14 13 28 28 H 1.09002 * 115.54973 * 330.57985 * 16 15 14 29 29 H 1.09001 * 117.49733 * 214.97413 * 17 16 15 30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 32 32 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 33 33 H 1.07998 * 119.57972 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.6856 -4.1782 -1.1975 12 6 3.5883 -5.2262 -1.1523 13 6 3.9976 -5.7129 0.0828 14 8 4.8784 -6.7432 0.1406 15 6 5.2647 -7.1943 1.4403 16 6 6.2555 -8.3523 1.3046 17 6 7.6724 -8.1368 1.8401 18 6 6.7028 -9.0534 2.5889 19 7 3.5410 -5.1780 1.2027 20 6 2.6835 -4.1749 1.1917 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.3466 -3.7816 -2.1431 25 1 3.9665 -5.6623 -2.0651 26 1 4.3829 -7.5320 1.9847 27 1 5.7359 -6.3754 1.9839 28 1 6.1433 -8.9646 0.4098 29 1 8.4924 -8.6073 1.2976 30 1 7.8991 -7.1698 2.2889 31 1 6.2915 -8.6895 3.5304 32 1 6.8849 -10.1270 2.5389 33 1 2.3326 -3.7632 2.1265 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:15 Heat of formation + Delta-G solvation = -9.222737 kcal Electronic energy + Delta-G solvation = -15222.775253 eV Core-core repulsion = 12634.514414 eV Total energy + Delta-G solvation = -2588.260840 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52743 -39.38558 -37.68960 -35.50289 -33.57795 -32.57403 -29.33057 -28.06750 -25.33415 -24.43931 -23.28193 -22.51450 -21.59758 -19.42171 -18.51079 -17.91682 -17.10779 -16.76744 -16.31792 -15.70623 -15.44882 -15.05591 -14.66777 -14.29148 -14.12910 -13.95264 -13.46742 -13.25398 -12.65683 -12.54994 -12.45017 -12.33325 -12.20372 -11.69559 -11.53915 -11.42647 -10.92139 -10.67921 -10.64830 -10.45436 -9.21799 -8.19498 -6.32510 0.26823 0.42822 1.40524 1.42162 1.54439 1.98821 2.40470 2.84907 2.90893 3.11764 3.40119 3.76870 3.91438 4.01199 4.16608 4.19477 4.22541 4.25410 4.50324 4.58302 4.59201 4.76129 4.77351 4.98844 5.12202 5.19101 5.22855 5.23792 5.34870 5.59096 5.73969 5.77358 6.16289 6.33093 6.79436 6.91424 7.36378 8.89375 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.045247 B = 0.004485 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.675861 B = 6242.013616 C = 6458.445029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.067 3.933 10 C -0.139 4.139 11 C -0.049 4.049 12 C -0.181 4.181 13 C 0.283 3.717 14 O -0.312 6.312 15 C 0.103 3.897 16 C -0.173 4.173 17 C -0.176 4.176 18 C -0.156 4.156 19 N -0.548 5.548 20 C 0.120 3.880 21 H 0.266 0.734 22 H 0.013 0.987 23 H 0.011 0.989 24 H 0.150 0.850 25 H 0.163 0.837 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.537 -14.884 1.612 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.029 3.971 10 C -0.141 4.141 11 C -0.074 4.074 12 C -0.201 4.201 13 C 0.104 3.896 14 O -0.221 6.221 15 C 0.028 3.972 16 C -0.191 4.191 17 C -0.212 4.212 18 C -0.193 4.193 19 N -0.271 5.271 20 C -0.034 4.034 21 H 0.075 0.925 22 H 0.031 0.969 23 H 0.029 0.971 24 H 0.168 0.832 25 H 0.181 0.819 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.821 -15.278 2.213 19.444 hybrid contribution -0.364 1.494 -0.492 1.614 sum 11.457 -13.784 1.720 18.006 Atomic orbital electron populations 1.70071 1.07503 1.27897 1.51194 1.25849 0.95712 1.02855 0.94607 0.85436 0.78830 0.79073 0.77941 1.19260 1.20160 1.20269 1.21396 0.92995 0.91271 1.51048 0.92960 1.17962 0.92415 0.90002 0.96726 1.21245 1.00503 0.98131 0.94229 1.21529 0.93812 0.93172 0.98937 1.21231 1.01821 0.99904 0.97145 1.19942 0.90434 0.88775 0.90456 1.86148 1.57321 1.45970 1.32635 1.22143 0.97495 0.95462 0.82103 1.22137 0.96459 0.99824 1.00699 1.23185 0.92627 1.01766 1.03664 1.23095 1.01995 0.99694 0.94517 1.67255 1.15334 1.14012 1.30542 1.22304 0.92018 0.90614 0.98462 0.92527 0.96912 0.97053 0.83242 0.81922 0.91996 0.92579 0.86522 0.87081 0.88941 0.88244 0.86412 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 2 C 0.01 0.46 5.46 84.65 0.46 0.93 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.53 -29.29 9.09 25.60 0.23 -29.06 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.07 3.40 5.13 29.10 0.15 3.55 16 10 C -0.14 -5.96 5.09 -19.77 -0.10 -6.06 16 11 C -0.05 -1.82 9.85 22.45 0.22 -1.60 16 12 C -0.18 -5.97 10.04 22.47 0.23 -5.74 16 13 C 0.28 10.01 7.49 84.80 0.63 10.64 16 14 O -0.31 -9.82 10.12 -89.89 -0.91 -10.73 16 15 C 0.10 2.72 5.59 71.98 0.40 3.12 16 16 C -0.17 -3.41 6.06 -10.79 -0.07 -3.48 16 17 C -0.18 -2.85 10.18 30.59 0.31 -2.54 16 18 C -0.16 -2.30 10.25 30.60 0.31 -1.99 16 19 N -0.55 -20.82 9.22 -308.96 -2.85 -23.67 16 20 C 0.12 4.86 10.85 84.63 0.92 5.78 16 21 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 22 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 23 H 0.01 0.60 8.09 -2.39 -0.02 0.58 16 24 H 0.15 5.06 8.06 -2.91 -0.02 5.03 16 25 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 26 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 27 H 0.06 1.55 7.84 -2.38 -0.02 1.54 16 28 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.58 8.03 -2.39 -0.02 1.56 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.16 6.09 8.06 -2.91 -0.02 6.06 16 Total: -1.00 -62.34 291.50 3.34 -58.99 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.08 Total: 10.33 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 3.71 Total: -26.43 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -2.56 Total: -77.67 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.91 Total: -10.73 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -62.34 3.34 -58.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.770 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds