Wall clock time and date at job start Thu Apr 9 2020 12:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38835 * 119.72687 * 2 1 4 4 C 1.37939 * 120.63660 * 180.02562 * 3 2 1 5 5 F 1.35094 * 120.13048 * 179.97438 * 4 3 2 6 6 C 1.39324 * 119.73483 * 0.02562 * 4 3 2 7 7 N 1.37779 * 133.50311 * 179.97438 * 6 4 3 8 8 H 0.97001 * 125.07173 * 359.97438 * 7 6 4 9 9 C 1.36797 * 109.85039 * 180.25228 * 7 6 4 10 10 C 1.34246 * 109.92233 * 359.60538 * 9 7 6 11 11 C 1.40581 * 119.32777 * 359.97438 * 6 4 3 12 12 C 1.36600 * 119.72419 * 180.02562 * 2 1 3 13 13 C 1.50700 * 120.09954 * 359.95564 * 12 2 1 14 14 C 1.50699 * 109.47299 * 89.99789 * 13 12 2 15 15 H 1.08009 * 119.99562 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00325 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00001 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47306 * 89.99878 * 18 16 14 20 20 H 1.48501 * 109.47217 * 209.99903 * 18 16 14 21 21 H 1.48500 * 109.47107 * 330.00105 * 18 16 14 22 22 H 1.09001 * 109.47078 * 90.00083 * 1 2 3 23 23 H 1.09002 * 109.47212 * 210.00351 * 1 2 3 24 24 H 1.09007 * 109.47053 * 330.00116 * 1 2 3 25 25 H 1.08003 * 119.68484 * 0.02562 * 3 2 1 26 26 H 1.08001 * 125.03516 * 179.74575 * 9 7 6 27 27 H 1.08001 * 126.49197 * 180.14793 * 10 9 7 28 28 H 1.08994 * 109.47456 * 210.00259 * 13 12 2 29 29 H 1.09005 * 109.46871 * 330.00425 * 13 12 2 30 30 H 0.96992 * 119.99615 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2056 0.0000 4 6 3.5747 1.2275 -0.0005 5 9 4.2342 2.4066 -0.0010 6 6 4.2848 0.0289 -0.0016 7 7 5.6281 -0.2777 -0.0028 8 1 6.3481 0.3722 -0.0034 9 6 5.7946 -1.6355 -0.0092 10 6 4.5976 -2.2432 -0.0036 11 6 3.5813 -1.1883 -0.0016 12 6 2.1843 -1.1863 -0.0005 13 6 1.4268 -2.4890 -0.0001 14 6 1.1733 -2.9232 -1.4207 15 1 1.5259 -2.3166 -2.2419 16 6 0.4913 -4.0948 -1.6723 17 7 0.2705 -4.4739 -2.9122 18 14 -0.1191 -5.1435 -0.2522 19 1 -1.4909 -4.7171 0.1243 20 1 -0.1397 -6.5703 -0.6636 21 1 0.7879 -4.9770 0.9117 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 1.6459 2.1354 0.0004 26 1 6.7478 -2.1433 -0.0153 27 1 4.4179 -3.3082 -0.0043 28 1 2.0138 -3.2505 0.5133 29 1 0.4751 -2.3557 0.5143 30 1 -0.2096 -5.2979 -3.0891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:19 Heat of formation + Delta-G solvation = -17.059287 kcal Electronic energy + Delta-G solvation = -15828.270430 eV Core-core repulsion = 13116.209467 eV Total energy + Delta-G solvation = -2712.060963 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.82198 -42.07581 -38.66941 -35.22731 -33.36107 -32.19341 -30.95482 -28.84298 -27.21447 -24.67836 -22.95906 -21.82462 -21.19832 -19.17599 -18.92303 -17.53186 -17.03042 -16.72938 -16.29261 -15.87901 -15.17145 -14.98427 -14.80912 -14.36059 -14.17439 -13.94532 -13.50551 -13.41121 -13.17780 -12.71605 -12.41760 -12.20220 -12.00726 -11.73512 -11.58523 -11.38744 -10.71061 -10.32366 -9.12563 -8.39890 -8.22863 -6.26485 0.10782 0.57541 1.39840 1.41709 1.53605 1.79523 2.18299 2.40082 2.82522 3.11199 3.30875 3.82097 4.00406 4.08420 4.31786 4.41533 4.60412 4.79833 4.85230 4.87186 4.96513 5.10576 5.16407 5.28519 5.37358 5.39092 5.60994 5.75258 5.81500 6.03869 6.19365 6.35026 6.70407 6.78065 7.35432 8.93518 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.008620 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.236580 B = 3247.368288 C = 3837.370006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.110 4.110 3 C -0.125 4.125 4 C 0.057 3.943 5 F -0.147 7.147 6 C 0.043 3.957 7 N -0.582 5.582 8 H 0.430 0.570 9 C 0.074 3.926 10 C -0.228 4.228 11 C -0.104 4.104 12 C -0.029 4.029 13 C 0.026 3.974 14 C -0.501 4.501 15 H 0.023 0.977 16 C 0.010 3.990 17 N -0.951 5.951 18 Si 0.944 3.056 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.246 1.246 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.159 0.841 26 H 0.221 0.779 27 H 0.143 0.857 28 H 0.026 0.974 29 H 0.040 0.960 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 8.555 9.373 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.035 3.965 5 F -0.125 7.125 6 C -0.065 4.065 7 N -0.187 5.187 8 H 0.270 0.730 9 C -0.052 4.052 10 C -0.253 4.253 11 C -0.109 4.109 12 C -0.029 4.029 13 C -0.011 4.011 14 C -0.539 4.539 15 H 0.041 0.959 16 C -0.186 4.186 17 N -0.592 5.592 18 Si 0.767 3.233 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.170 1.170 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.177 0.823 26 H 0.237 0.763 27 H 0.160 0.840 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.585 8.540 9.276 15.254 hybrid contribution 0.011 -0.256 -0.183 0.315 sum 8.597 8.284 9.094 15.007 Atomic orbital electron populations 1.20712 0.89737 1.03102 1.02180 1.19279 0.97360 0.91166 1.03329 1.20847 0.90866 0.99474 1.03233 1.16572 0.90064 0.77760 1.12109 1.91412 1.81116 1.45088 1.94928 1.18211 0.85799 0.93778 1.08690 1.41663 1.04385 1.07721 1.64905 0.72999 1.22411 1.00316 0.81440 1.01018 1.21914 0.91300 0.98654 1.13430 1.19272 0.93082 0.92941 1.05654 1.19415 0.91848 0.96127 0.95541 1.18620 0.95464 0.91209 0.95820 1.20962 1.35165 1.06516 0.91274 0.95908 1.25888 0.95801 0.98717 0.98231 1.70059 1.43202 1.24584 1.21311 0.85747 0.79876 0.77579 0.80081 1.18773 1.21088 1.16986 0.92323 0.91689 0.89364 0.82298 0.76290 0.83959 0.95611 0.94229 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.45 9.57 71.24 0.68 -2.77 16 2 C -0.11 -4.23 5.84 -20.10 -0.12 -4.35 16 3 C -0.12 -4.17 9.64 22.34 0.22 -3.96 16 4 C 0.06 1.93 7.32 22.46 0.16 2.09 16 5 F -0.15 -4.50 17.27 44.97 0.78 -3.73 16 6 C 0.04 1.52 7.26 39.04 0.28 1.80 16 7 N -0.58 -15.37 6.07 -187.48 -1.14 -16.51 16 8 H 0.43 8.10 8.96 -92.71 -0.83 7.27 16 9 C 0.07 1.89 11.81 83.01 0.98 2.87 16 10 C -0.23 -8.09 10.77 23.51 0.25 -7.83 16 11 C -0.10 -4.26 6.14 -20.20 -0.12 -4.38 16 12 C -0.03 -1.25 5.07 -19.89 -0.10 -1.35 16 13 C 0.03 1.24 3.68 29.10 0.11 1.35 16 14 C -0.50 -29.03 9.65 25.60 0.25 -28.78 16 15 H 0.02 1.50 7.98 -2.91 -0.02 1.47 16 16 C 0.01 0.59 5.47 84.65 0.46 1.06 16 17 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 18 Si 0.94 43.59 27.47 68.60 1.88 45.48 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 22 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.06 2.31 5.89 -2.39 -0.01 2.30 16 24 H 0.09 2.29 8.08 -2.38 -0.02 2.27 16 25 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 26 H 0.22 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.14 5.10 8.06 -2.91 -0.02 5.07 16 28 H 0.03 1.23 6.96 -2.39 -0.02 1.21 16 29 H 0.04 1.81 5.32 -2.38 -0.01 1.80 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -70.89 261.58 5.16 -65.73 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.29 Total: 12.54 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 3.05 Total: -44.25 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -0.84 Total: -75.77 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.78 Total: -3.73 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -70.89 5.16 -65.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.672 kcal (2) G-P(sol) polarization free energy of solvation -70.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds