Wall clock time and date at job start Thu Apr 9 2020 12:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38256 * 120.38902 * 269.72996 * 10 9 7 12 12 N 1.31847 * 120.88122 * 179.70454 * 11 10 9 13 13 C 1.31844 * 121.78355 * 0.57562 * 12 11 10 14 14 C 1.38708 * 120.68200 * 359.71524 * 13 12 11 15 15 O 1.35912 * 120.47174 * 180.02562 * 14 13 12 16 16 C 1.42905 * 116.99870 * 359.97377 * 15 14 13 17 17 C 1.52998 * 109.46510 * 180.02562 * 16 15 14 18 18 C 1.53007 * 117.49808 * 243.74401 * 17 16 15 19 19 C 1.53000 * 117.49593 * 175.08839 * 17 16 15 20 20 C 1.38537 * 120.38892 * 90.00397 * 10 9 7 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.07995 * 119.55744 * 359.97438 * 11 10 9 25 25 H 1.07996 * 119.65581 * 179.68303 * 13 12 11 26 26 H 1.08997 * 109.47310 * 299.99879 * 16 15 14 27 27 H 1.08995 * 109.47154 * 60.00068 * 16 15 14 28 28 H 1.08996 * 115.55408 * 29.42089 * 17 16 15 29 29 H 1.09000 * 117.49663 * 0.02562 * 18 17 16 30 30 H 1.09000 * 117.49925 * 145.02303 * 18 17 16 31 31 H 1.09002 * 117.50284 * 214.97775 * 19 17 16 32 32 H 1.09006 * 117.49674 * 359.97438 * 19 17 16 33 33 H 1.08006 * 120.80930 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6806 -4.1850 -1.1799 12 7 3.5418 -5.1834 -1.1869 13 6 3.9995 -5.7135 -0.0698 14 6 3.5897 -5.2288 1.1635 15 8 4.0646 -5.7782 2.3123 16 6 4.9892 -6.8598 2.1804 17 6 5.4088 -7.3443 3.5696 18 6 6.8814 -7.1916 3.9561 19 6 6.3110 -8.5776 3.6450 20 6 2.6860 -4.1719 1.2077 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.3253 -3.7813 -2.1164 25 1 4.7003 -6.5339 -0.1157 26 1 4.5158 -7.6784 1.6382 27 1 5.8684 -6.5215 1.6322 28 1 4.6660 -7.2153 4.3568 29 1 7.5511 -6.7457 3.2207 30 1 7.1073 -6.9626 4.9975 31 1 6.1620 -9.2599 4.4819 32 1 6.6053 -9.0442 2.7048 33 1 2.3476 -3.7724 2.1524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:21 Heat of formation + Delta-G solvation = 7.813703 kcal Electronic energy + Delta-G solvation = -15290.245198 eV Core-core repulsion = 12702.723114 eV Total energy + Delta-G solvation = -2587.522084 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18538 -38.34092 -36.81859 -33.81510 -31.91480 -30.34659 -27.72523 -27.14343 -23.70049 -22.88444 -22.65907 -21.20052 -20.47572 -17.57139 -16.63428 -16.34699 -16.07038 -15.88308 -15.23496 -14.62139 -14.30189 -13.46735 -13.25133 -12.68795 -12.41330 -12.24907 -11.89741 -11.78874 -11.54496 -11.41372 -11.24236 -10.82685 -10.74845 -10.59540 -10.20988 -9.99166 -9.66770 -8.82594 -8.57818 -8.46438 -7.87376 -6.10080 -4.14750 1.77279 1.89953 3.10939 3.30343 3.34359 3.37829 3.58536 4.33050 4.48346 4.49235 4.59854 4.73542 4.93729 5.04159 5.10427 5.25101 5.30834 5.34234 5.36127 5.57367 5.61131 5.77160 5.81321 5.89751 6.08479 6.30079 6.50036 6.84778 7.15039 7.43071 7.56174 7.66013 7.84780 8.21480 8.51738 8.89454 9.49695 10.99882 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.004920 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.713190 B = 5689.508524 C = 6087.642145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.051 3.949 10 C -0.041 4.041 11 C 0.055 3.945 12 N -0.456 5.456 13 C -0.018 4.018 14 C 0.074 3.926 15 O -0.311 6.311 16 C 0.090 3.910 17 C -0.155 4.155 18 C -0.177 4.177 19 C -0.171 4.171 20 C -0.116 4.116 21 H 0.264 0.736 22 H 0.034 0.966 23 H 0.037 0.963 24 H 0.155 0.845 25 H 0.144 0.856 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 -13.913 5.399 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.014 3.986 10 C -0.043 4.043 11 C -0.103 4.103 12 N -0.165 5.165 13 C -0.176 4.176 14 C 0.028 3.972 15 O -0.224 6.224 16 C 0.015 3.985 17 C -0.173 4.173 18 C -0.213 4.213 19 C -0.208 4.208 20 C -0.142 4.142 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.172 0.828 25 H 0.161 0.839 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.781 -14.096 4.820 17.821 hybrid contribution 0.316 1.173 0.722 1.413 sum 10.096 -12.923 5.541 17.310 Atomic orbital electron populations 1.69936 1.06031 1.27135 1.49960 1.24985 0.94898 0.99279 0.94914 0.86565 0.79537 0.82620 0.78810 1.20056 1.21137 1.20140 1.20963 0.93017 0.89661 1.51835 0.92476 1.18352 0.92267 0.88955 0.99035 1.21567 0.95891 0.95156 0.91700 1.22597 0.95627 0.93595 0.98498 1.67422 1.09377 1.09787 1.29929 1.22528 1.04387 1.03148 0.87494 1.20034 0.96123 0.95133 0.85938 1.86027 1.59065 1.48268 1.29009 1.22241 0.91998 0.88398 0.95911 1.22106 0.94518 1.02572 0.98071 1.23112 0.95735 0.99653 1.02850 1.22996 1.03284 0.91000 1.03556 1.20886 0.97965 0.95316 1.00050 0.92630 0.94789 0.94521 0.82755 0.83862 0.91672 0.91951 0.86542 0.88491 0.88443 0.88259 0.88514 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.24 9.09 -34.44 -0.31 -14.56 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.29 5.13 -29.03 -0.15 1.14 16 10 C -0.04 -0.90 5.08 -104.50 -0.53 -1.43 16 11 C 0.06 1.13 10.86 -17.54 -0.19 0.94 16 12 N -0.46 -8.89 10.36 -13.13 -0.14 -9.02 16 13 C -0.02 -0.32 10.22 -17.37 -0.18 -0.50 16 14 C 0.07 1.34 6.71 -39.08 -0.26 1.08 16 15 O -0.31 -4.96 10.15 -19.46 -0.20 -5.16 16 16 C 0.09 1.06 5.03 37.16 0.19 1.24 16 17 C -0.15 -1.53 6.05 -90.62 -0.55 -2.08 16 18 C -0.18 -1.49 10.18 -26.69 -0.27 -1.77 16 19 C -0.17 -1.30 10.25 -26.69 -0.27 -1.57 16 20 C -0.12 -2.34 9.81 -39.14 -0.38 -2.73 16 21 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 22 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 23 H 0.04 0.95 8.09 -51.93 -0.42 0.53 16 24 H 0.16 2.97 8.06 -52.49 -0.42 2.55 16 25 H 0.14 2.01 6.32 -52.49 -0.33 1.68 16 26 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 27 H 0.06 0.69 7.41 -51.93 -0.38 0.30 16 28 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 2.70 8.06 -52.48 -0.42 2.28 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -29.88 288.89 -7.73 -37.60 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.45 Total: -0.34 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -3.01 Total: -18.62 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.60 Total: -34.15 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.20 Total: -5.16 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.88 -7.73 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.417 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds