Wall clock time and date at job start Thu Apr 9 2020 12:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38256 * 120.38902 * 269.72996 * 10 9 7 12 12 N 1.31847 * 120.88122 * 179.70454 * 11 10 9 13 13 C 1.31844 * 121.78355 * 0.57562 * 12 11 10 14 14 C 1.38708 * 120.68200 * 359.71524 * 13 12 11 15 15 O 1.35912 * 120.47174 * 180.02562 * 14 13 12 16 16 C 1.42905 * 116.99870 * 359.97377 * 15 14 13 17 17 C 1.52998 * 109.46510 * 180.02562 * 16 15 14 18 18 C 1.53007 * 117.49808 * 243.74401 * 17 16 15 19 19 C 1.53000 * 117.49593 * 175.08839 * 17 16 15 20 20 C 1.38537 * 120.38892 * 90.00397 * 10 9 7 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.07995 * 119.55744 * 359.97438 * 11 10 9 25 25 H 1.07996 * 119.65581 * 179.68303 * 13 12 11 26 26 H 1.08997 * 109.47310 * 299.99879 * 16 15 14 27 27 H 1.08995 * 109.47154 * 60.00068 * 16 15 14 28 28 H 1.08996 * 115.55408 * 29.42089 * 17 16 15 29 29 H 1.09000 * 117.49663 * 0.02562 * 18 17 16 30 30 H 1.09000 * 117.49925 * 145.02303 * 18 17 16 31 31 H 1.09002 * 117.50284 * 214.97775 * 19 17 16 32 32 H 1.09006 * 117.49674 * 359.97438 * 19 17 16 33 33 H 1.08006 * 120.80930 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6806 -4.1850 -1.1799 12 7 3.5418 -5.1834 -1.1869 13 6 3.9995 -5.7135 -0.0698 14 6 3.5897 -5.2288 1.1635 15 8 4.0646 -5.7782 2.3123 16 6 4.9892 -6.8598 2.1804 17 6 5.4088 -7.3443 3.5696 18 6 6.8814 -7.1916 3.9561 19 6 6.3110 -8.5776 3.6450 20 6 2.6860 -4.1719 1.2077 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.3253 -3.7813 -2.1164 25 1 4.7003 -6.5339 -0.1157 26 1 4.5158 -7.6784 1.6382 27 1 5.8684 -6.5215 1.6322 28 1 4.6660 -7.2153 4.3568 29 1 7.5511 -6.7457 3.2207 30 1 7.1073 -6.9626 4.9975 31 1 6.1620 -9.2599 4.4819 32 1 6.6053 -9.0442 2.7048 33 1 2.3476 -3.7724 2.1524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:20 Heat of formation + Delta-G solvation = -9.060721 kcal Electronic energy + Delta-G solvation = -15290.976928 eV Core-core repulsion = 12702.723114 eV Total energy + Delta-G solvation = -2588.253814 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60066 -39.51928 -37.71976 -35.74351 -33.76165 -31.84264 -29.28923 -28.46479 -25.55702 -24.42257 -23.27313 -22.59277 -21.51125 -18.92103 -18.50189 -17.88727 -17.55081 -16.99860 -16.56444 -16.20830 -15.16190 -14.84701 -14.74975 -14.26242 -14.07491 -13.83373 -13.59744 -13.16039 -12.76129 -12.69109 -12.50616 -12.37132 -12.25656 -11.89443 -11.71164 -11.38648 -10.96114 -10.63477 -10.36794 -10.22865 -9.34734 -8.22644 -6.35529 0.24742 0.33119 1.41122 1.43071 1.51460 2.00899 2.39383 2.86400 2.88803 3.09721 3.53625 3.69401 3.77573 3.90635 4.02832 4.06832 4.17652 4.21538 4.40914 4.50214 4.54765 4.68433 4.78615 4.97697 5.01099 5.14006 5.19633 5.24400 5.29963 5.62381 5.68551 5.70740 6.11494 6.29837 6.75018 6.98651 7.33191 8.87194 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.004920 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.713190 B = 5689.508524 C = 6087.642145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.061 3.939 10 C -0.061 4.061 11 C 0.046 3.954 12 N -0.460 5.460 13 C -0.005 4.005 14 C 0.086 3.914 15 O -0.320 6.320 16 C 0.081 3.919 17 C -0.176 4.176 18 C -0.180 4.180 19 C -0.151 4.151 20 C -0.130 4.130 21 H 0.267 0.733 22 H 0.012 0.988 23 H 0.019 0.981 24 H 0.158 0.842 25 H 0.185 0.815 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.880 -15.097 5.673 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.023 3.977 10 C -0.063 4.063 11 C -0.111 4.111 12 N -0.169 5.169 13 C -0.163 4.163 14 C 0.038 3.962 15 O -0.233 6.233 16 C 0.006 3.994 17 C -0.194 4.194 18 C -0.217 4.217 19 C -0.188 4.188 20 C -0.156 4.156 21 H 0.076 0.924 22 H 0.030 0.970 23 H 0.037 0.963 24 H 0.176 0.824 25 H 0.202 0.798 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.987 -15.292 5.095 20.087 hybrid contribution -0.296 1.384 0.727 1.591 sum 11.691 -13.908 5.822 19.079 Atomic orbital electron populations 1.70049 1.07541 1.28189 1.50739 1.25851 0.95745 1.02904 0.94352 0.85517 0.78347 0.78218 0.79098 1.19247 1.20388 1.19510 1.21270 0.93016 0.91074 1.51805 0.92883 1.18075 0.92527 0.90036 0.97036 1.21207 0.96698 0.95276 0.93122 1.22573 0.96233 0.94207 0.98092 1.67499 1.09180 1.09432 1.30804 1.23154 1.03627 1.03054 0.86503 1.19925 0.95042 0.94150 0.87042 1.86042 1.59742 1.49449 1.28104 1.22618 0.91620 0.87504 0.97635 1.22084 0.95208 1.05172 0.96945 1.23216 0.94528 1.00571 1.03341 1.23120 1.00673 0.90422 1.04606 1.20886 0.98961 0.96466 0.99299 0.92382 0.96997 0.96250 0.82449 0.79829 0.90095 0.90745 0.87471 0.88225 0.87902 0.86972 0.87227 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 2 C 0.01 0.59 5.46 84.65 0.46 1.05 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.53 -30.17 9.09 25.60 0.23 -29.93 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.06 3.20 5.13 29.10 0.15 3.35 16 10 C -0.06 -2.73 5.08 -19.79 -0.10 -2.83 16 11 C 0.05 1.89 10.86 84.69 0.92 2.81 16 12 N -0.46 -17.20 10.36 -195.44 -2.02 -19.22 16 13 C -0.01 -0.17 10.22 84.80 0.87 0.70 16 14 C 0.09 2.97 6.71 22.60 0.15 3.13 16 15 O -0.32 -9.66 10.15 -92.56 -0.94 -10.60 16 16 C 0.08 1.66 5.03 71.98 0.36 2.02 16 17 C -0.18 -3.07 6.05 -10.79 -0.07 -3.14 16 18 C -0.18 -2.57 10.18 30.62 0.31 -2.26 16 19 C -0.15 -1.79 10.25 30.62 0.31 -1.48 16 20 C -0.13 -5.30 9.81 22.56 0.22 -5.08 16 21 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 22 H 0.01 0.65 8.09 -2.39 -0.02 0.64 16 23 H 0.02 1.05 8.09 -2.38 -0.02 1.03 16 24 H 0.16 6.19 8.06 -2.91 -0.02 6.16 16 25 H 0.18 4.34 6.32 -2.91 -0.02 4.33 16 26 H 0.08 1.42 7.68 -2.39 -0.02 1.40 16 27 H 0.07 1.37 7.41 -2.39 -0.02 1.35 16 28 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.10 1.37 8.03 -2.39 -0.02 1.35 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.13 5.38 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -64.20 288.89 4.26 -59.93 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.09 Total: 10.18 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 3.82 Total: -31.67 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.74 Total: -73.76 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.94 Total: -10.60 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.20 4.26 -59.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.871 kcal (2) G-P(sol) polarization free energy of solvation -64.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds