Wall clock time and date at job start Thu Apr 9 2020 12:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00316 * 2 1 4 4 H 1.48503 * 109.47135 * 239.99796 * 3 2 1 5 5 H 1.48497 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47481 * 119.99888 * 3 2 1 7 7 C 1.37881 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47130 * 180.02562 * 10 9 7 12 12 C 1.39673 * 120.18108 * 270.02360 * 11 10 9 13 13 C 1.46487 * 133.97613 * 359.95068 * 12 11 10 14 14 C 1.34244 * 107.01180 * 180.02562 * 13 12 11 15 15 N 1.36805 * 109.92970 * 359.97438 * 14 13 12 16 16 H 0.97003 * 125.06813 * 180.02562 * 15 14 13 17 17 C 1.37815 * 109.86587 * 0.02562 * 15 14 13 18 18 C 1.39095 * 133.39624 * 180.02562 * 17 15 14 19 19 C 1.37715 * 119.95101 * 180.02562 * 18 17 15 20 20 C 1.37780 * 120.18711 * 90.00001 * 11 10 9 21 21 F 1.35102 * 119.83826 * 0.02562 * 20 11 10 22 22 H 0.96997 * 119.99751 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46980 * 60.00635 * 9 7 2 24 24 H 1.09001 * 109.47642 * 300.00122 * 9 7 2 25 25 H 1.08995 * 109.46809 * 60.00327 * 10 9 7 26 26 H 1.08996 * 109.46673 * 300.00482 * 10 9 7 27 27 H 1.08005 * 126.49413 * 0.06429 * 13 12 11 28 28 H 1.07997 * 125.03308 * 180.02562 * 14 13 12 29 29 H 1.07997 * 120.02440 * 0.29854 * 18 17 15 30 30 H 1.08002 * 119.67338 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4916 -4.9672 -0.0001 12 6 1.1396 -5.5754 1.2070 13 6 1.3394 -5.2297 2.6164 14 6 0.7750 -6.2064 3.3442 15 7 0.2296 -7.1491 2.5163 16 1 -0.2332 -7.9490 2.8111 17 6 0.4357 -6.7929 1.2010 18 6 0.0951 -7.3805 -0.0128 19 6 0.4490 -6.7702 -1.1955 20 6 1.1455 -5.5668 -1.1913 21 9 1.4839 -4.9822 -2.3614 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8898 24 1 0.6239 -2.5567 0.8903 25 1 2.8717 -3.6045 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 1.8444 -4.3545 2.9977 28 1 0.7539 -6.2421 4.4234 29 1 -0.4503 -8.3126 -0.0278 30 1 0.1819 -7.2302 -2.1354 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:22 Heat of formation + Delta-G solvation = -3.787979 kcal Electronic energy + Delta-G solvation = -15556.356103 eV Core-core repulsion = 12844.870627 eV Total energy + Delta-G solvation = -2711.485476 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.16965 -40.93070 -36.58094 -34.04757 -32.27778 -30.22661 -28.58219 -28.14919 -24.95908 -22.37392 -21.62899 -20.80306 -19.87304 -17.61077 -16.76769 -16.30989 -15.63742 -14.99949 -14.94489 -14.38830 -14.00736 -13.40088 -13.06931 -12.88487 -12.49406 -12.42112 -12.19201 -11.88853 -11.31934 -10.97499 -10.84108 -10.60346 -10.36583 -9.76504 -9.68902 -9.10578 -8.97329 -8.27293 -7.88007 -7.27875 -5.92243 -3.94926 1.31978 1.77513 2.94527 3.27562 3.38494 3.42364 3.45191 4.06625 4.52130 4.75731 4.92473 5.12202 5.23557 5.43035 5.50345 5.58131 5.76094 6.05542 6.19666 6.28154 6.38258 6.52376 6.72583 6.81930 6.95306 7.05912 7.10989 7.44825 7.68033 7.76308 7.91318 8.08188 8.48446 9.11528 9.68194 11.18892 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.029373 B = 0.007027 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.014252 B = 3983.680206 C = 4613.861286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.034 3.966 10 C -0.078 4.078 11 C -0.039 4.039 12 C -0.085 4.085 13 C -0.182 4.182 14 C 0.038 3.962 15 N -0.600 5.600 16 H 0.412 0.588 17 C 0.086 3.914 18 C -0.125 4.125 19 C -0.124 4.124 20 C 0.057 3.943 21 F -0.139 7.139 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.019 0.981 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.151 0.849 28 H 0.169 0.831 29 H 0.122 0.878 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 -15.740 4.445 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.003 4.003 10 C -0.115 4.115 11 C -0.040 4.040 12 C -0.090 4.090 13 C -0.207 4.207 14 C -0.087 4.087 15 N -0.204 5.204 16 H 0.248 0.752 17 C -0.021 4.021 18 C -0.146 4.146 19 C -0.144 4.144 20 C 0.037 3.963 21 F -0.118 7.118 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.168 0.832 28 H 0.186 0.814 29 H 0.140 0.860 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.018 -15.679 4.476 16.305 hybrid contribution 0.137 0.679 -0.045 0.694 sum 0.155 -15.000 4.432 15.642 Atomic orbital electron populations 1.69971 1.06049 1.26604 1.50772 1.25014 0.94827 0.99154 0.95385 0.86658 0.79567 0.83162 0.78607 1.20231 1.21336 1.20248 1.21208 0.93003 0.90920 1.50674 0.92637 1.19026 0.93573 0.90168 0.97538 1.20752 0.98520 0.90556 1.01673 1.19820 0.97575 0.96852 0.89788 1.18816 1.02178 0.94734 0.93240 1.21795 1.07352 1.01024 0.90563 1.21751 1.00318 0.90650 0.95980 1.41690 1.51821 1.22912 1.03956 0.75226 1.18241 1.02147 0.96649 0.85068 1.19598 1.05136 1.01042 0.88818 1.20680 1.00397 0.94987 0.98342 1.17158 1.03852 0.94103 0.81197 1.91463 1.90785 1.84011 1.45540 0.93005 0.96508 0.96264 0.91695 0.91883 0.83181 0.81413 0.85967 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.93 4.95 -27.88 -0.14 0.79 16 10 C -0.08 -1.75 5.05 -27.88 -0.14 -1.89 16 11 C -0.04 -0.79 5.17 -104.25 -0.54 -1.33 16 12 C -0.08 -1.55 6.14 -105.14 -0.65 -2.20 16 13 C -0.18 -2.92 10.78 -37.67 -0.41 -3.32 16 14 C 0.04 0.46 11.81 -16.74 -0.20 0.26 16 15 N -0.60 -7.06 6.07 -10.64 -0.06 -7.12 16 16 H 0.41 3.24 8.96 -40.82 -0.37 2.87 16 17 C 0.09 1.31 7.27 -83.95 -0.61 0.70 16 18 C -0.13 -1.73 10.06 -39.45 -0.40 -2.13 16 19 C -0.12 -1.91 9.99 -39.48 -0.39 -2.31 16 20 C 0.06 1.10 7.23 -39.45 -0.29 0.81 16 21 F -0.14 -2.85 16.46 2.25 0.04 -2.81 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.39 7.91 -51.93 -0.41 0.98 16 26 H 0.06 1.42 7.63 -51.93 -0.40 1.03 16 27 H 0.15 2.36 8.06 -52.48 -0.42 1.94 16 28 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 268.77 15.07 4.05 4.05 Total: -1.00 -33.45 268.77 -7.68 -41.13 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.25 Total: -0.86 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -4.17 Total: -24.54 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.67 Total: -34.07 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.45 -7.68 -41.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.340 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds