Wall clock time and date at job start Thu Apr 9 2020 12:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48501 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47409 * 300.00200 * 3 2 1 6 6 H 1.48505 * 109.46945 * 60.00713 * 3 2 1 7 7 C 1.37884 * 119.99577 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99594 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46591 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46591 * 180.02562 * 10 9 7 12 12 C 1.36645 * 120.09886 * 264.82260 * 11 10 9 13 13 C 1.38993 * 120.50102 * 179.72881 * 12 11 10 14 14 F 1.35097 * 119.69332 * 180.25058 * 13 12 11 15 15 C 1.37984 * 120.60988 * 0.22722 * 13 12 11 16 16 C 1.39087 * 119.76444 * 0.02562 * 15 13 12 17 17 N 1.37690 * 133.48934 * 180.02562 * 16 15 13 18 18 H 0.97002 * 125.06373 * 359.97438 * 17 16 15 19 19 C 1.36905 * 109.86914 * 179.97438 * 17 16 15 20 20 C 1.34201 * 109.93192 * 0.02562 * 19 17 16 21 21 C 1.39594 * 120.10243 * 85.00063 * 11 10 9 22 22 H 0.96999 * 119.99457 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47518 * 60.00507 * 9 7 2 24 24 H 1.08996 * 109.46920 * 299.99635 * 9 7 2 25 25 H 1.08995 * 109.46919 * 59.99964 * 10 9 7 26 26 H 1.08996 * 109.47047 * 299.99381 * 10 9 7 27 27 H 1.07995 * 119.74949 * 359.95728 * 12 11 10 28 28 H 1.08007 * 120.12248 * 180.02562 * 15 13 12 29 29 H 1.08001 * 125.03374 * 180.02562 * 19 17 16 30 30 H 1.08002 * 126.50232 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 6 1.2408 -5.6143 1.1759 13 6 0.5416 -6.8155 1.1856 14 9 0.2984 -7.4389 2.3592 15 6 0.0932 -7.3769 0.0076 16 6 0.3428 -6.7364 -1.2015 17 7 0.0360 -7.0311 -2.5110 18 1 -0.4521 -7.8157 -2.8060 19 6 0.5225 -6.0517 -3.3347 20 6 1.1465 -5.1114 -2.6084 21 6 1.0507 -5.5205 -1.2046 22 1 -0.4849 0.8401 0.0004 23 1 0.6239 -2.5568 -0.8903 24 1 0.6246 -2.5570 0.8897 25 1 2.8718 -3.6044 0.8894 26 1 2.8717 -3.6045 -0.8905 27 1 1.5853 -5.1873 2.1061 28 1 -0.4497 -8.3105 0.0243 29 1 0.4194 -6.0378 -4.4096 30 1 1.6274 -4.2214 -2.9867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:24 Heat of formation + Delta-G solvation = -24.261996 kcal Electronic energy + Delta-G solvation = -15375.333368 eV Core-core repulsion = 12662.960072 eV Total energy + Delta-G solvation = -2712.373296 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85503 -42.13886 -38.15582 -35.73392 -33.99679 -31.71196 -30.37126 -29.30694 -26.90804 -24.02074 -22.90251 -22.40208 -21.17683 -18.96958 -18.44892 -17.82579 -17.01971 -16.62875 -16.46428 -16.40217 -15.21377 -15.05912 -14.70476 -14.57975 -14.09918 -14.04676 -13.60657 -13.28904 -12.87967 -12.76829 -12.71238 -12.20745 -11.91351 -11.74416 -11.47623 -11.13251 -10.55456 -10.46498 -9.17523 -8.57810 -8.16985 -6.29279 0.03331 0.48960 1.42042 1.42554 1.56154 1.80759 2.17127 2.42894 2.75570 3.15560 3.40337 3.71042 4.01506 4.09515 4.24330 4.33699 4.61246 4.62274 4.80088 4.88374 4.95063 5.09672 5.15706 5.26078 5.47970 5.52505 5.72078 5.72890 5.86243 5.90156 6.13998 6.24989 6.76602 6.87514 7.39911 8.94580 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.028297 B = 0.006527 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.261917 B = 4288.843997 C = 4956.669130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.043 3.957 10 C -0.064 4.064 11 C -0.007 4.007 12 C -0.198 4.198 13 C 0.107 3.893 14 F -0.143 7.143 15 C -0.170 4.170 16 C 0.108 3.892 17 N -0.578 5.578 18 H 0.435 0.565 19 C 0.073 3.927 20 C -0.228 4.228 21 C -0.140 4.140 22 H 0.263 0.737 23 H -0.007 1.007 24 H -0.015 1.015 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.160 0.840 29 H 0.219 0.781 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -15.562 -5.979 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.005 3.995 10 C -0.101 4.101 11 C -0.008 4.008 12 C -0.218 4.218 13 C 0.086 3.914 14 F -0.121 7.121 15 C -0.191 4.191 16 C 0.000 4.000 17 N -0.183 5.183 18 H 0.275 0.725 19 C -0.053 4.053 20 C -0.252 4.252 21 C -0.145 4.145 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.003 0.997 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.178 0.822 29 H 0.235 0.765 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.408 -15.586 -6.023 16.714 hybrid contribution -0.119 0.737 0.433 0.863 sum 0.289 -14.849 -5.590 15.869 Atomic orbital electron populations 1.70133 1.07909 1.27654 1.51714 1.25999 0.95731 1.03392 0.94689 0.85374 0.79144 0.78628 0.77747 1.18389 1.20255 1.20533 1.21721 0.93644 0.92053 1.50475 0.91827 1.18840 0.93826 0.92083 0.94704 1.20546 0.97381 0.90347 1.01820 1.19253 0.95365 0.94875 0.91307 1.20588 1.05667 0.96405 0.99133 1.17161 1.00672 0.92573 0.80972 1.91449 1.92804 1.81991 1.45905 1.19848 1.07796 1.03329 0.88142 1.17832 1.00217 0.95597 0.86398 1.41708 1.50240 1.23558 1.02834 0.72453 1.22403 0.97116 0.87956 0.97785 1.21939 1.09815 1.02784 0.90675 1.19464 1.03978 0.96604 0.94436 0.92829 0.98854 0.99700 0.91693 0.91370 0.85097 0.82237 0.76469 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.04 2.34 4.96 29.85 0.15 2.49 16 10 C -0.06 -2.81 5.20 29.85 0.16 -2.65 16 11 C -0.01 -0.29 5.13 -19.91 -0.10 -0.40 16 12 C -0.20 -7.36 9.57 22.08 0.21 -7.15 16 13 C 0.11 3.50 7.28 22.39 0.16 3.66 16 14 F -0.14 -4.51 17.25 44.97 0.78 -3.73 16 15 C -0.17 -4.77 10.05 22.41 0.23 -4.54 16 16 C 0.11 3.18 7.28 39.03 0.28 3.47 16 17 N -0.58 -11.88 6.07 -187.59 -1.14 -13.02 16 18 H 0.43 5.13 8.96 -92.71 -0.83 4.30 16 19 C 0.07 1.56 11.82 82.98 0.98 2.54 16 20 C -0.23 -7.15 10.87 23.51 0.26 -6.89 16 21 C -0.14 -5.06 6.15 -20.19 -0.12 -5.18 16 22 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 23 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 24 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 25 H 0.06 2.74 8.04 -2.39 -0.02 2.72 16 26 H 0.07 2.89 8.04 -2.39 -0.02 2.87 16 27 H 0.13 4.72 8.05 -2.91 -0.02 4.69 16 28 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.22 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -71.22 269.94 5.17 -66.06 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.33 Total: 7.03 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 2.89 Total: -45.35 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -0.85 Total: -70.73 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.78 Total: -3.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.22 5.17 -66.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.798 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds