Wall clock time and date at job start Thu Apr 9 2020 12:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 119.99985 * 2 1 4 4 H 1.48505 * 109.47028 * 269.99673 * 3 2 1 5 5 H 1.48503 * 109.47378 * 29.99930 * 3 2 1 6 6 H 1.48504 * 109.47397 * 150.00137 * 3 2 1 7 7 C 1.37876 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00022 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47269 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.46894 * 180.02562 * 10 9 7 12 12 C 1.38264 * 119.85141 * 269.98946 * 11 10 9 13 13 C 1.38272 * 120.05994 * 180.02562 * 12 11 10 14 14 C 1.38586 * 119.87672 * 0.02562 * 13 12 11 15 15 C 1.39223 * 120.16749 * 359.88833 * 14 13 12 16 16 C 1.38235 * 119.85816 * 90.00000 * 11 10 9 17 17 O 1.35937 * 120.79826 * 180.27707 * 15 14 13 18 18 C 1.42959 * 117.75450 * 339.75992 * 17 15 14 19 19 C 1.53546 * 108.79753 * 49.41622 * 18 17 15 20 20 N 1.40386 * 120.08055 * 179.77748 * 14 13 12 21 21 H 0.96996 * 119.99911 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46830 * 59.99981 * 9 7 2 23 23 H 1.08998 * 109.47101 * 300.00116 * 9 7 2 24 24 H 1.08998 * 109.47339 * 60.00135 * 10 9 7 25 25 H 1.08998 * 109.47026 * 300.00005 * 10 9 7 26 26 H 1.08001 * 119.96952 * 0.05997 * 12 11 10 27 27 H 1.08007 * 120.06577 * 179.97438 * 13 12 11 28 28 H 1.08002 * 119.96850 * 0.22020 * 16 11 10 29 29 H 1.08994 * 109.58572 * 169.20922 * 18 17 15 30 30 H 1.09002 * 109.58473 * 289.62775 * 18 17 15 31 31 H 1.08991 * 109.83422 * 61.34642 * 19 18 17 32 32 H 1.09001 * 109.82978 * 182.30122 * 19 18 17 33 33 H 0.96998 * 121.14868 * 346.30421 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6367 0.0001 11 6 5.5285 -2.6367 0.0001 12 6 6.2167 -2.6370 -1.1990 13 6 7.5995 -2.6375 -1.2040 14 6 8.2941 -2.6382 -0.0048 15 6 7.6033 -2.6361 1.2039 16 6 6.2167 -2.6366 1.1990 17 8 8.2717 -2.6312 2.3876 18 6 9.6336 -3.0660 2.3849 19 6 10.3839 -2.3358 1.2618 20 7 9.6980 -2.6435 -0.0049 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6797 0.8894 23 1 3.8746 -0.6809 -0.8905 24 1 3.6579 -3.1507 -0.8896 25 1 3.6585 -3.1503 0.8903 26 1 5.6738 -2.6362 -2.1327 27 1 8.1372 -2.6381 -2.1407 28 1 5.6738 -2.6401 2.1327 29 1 10.0940 -2.8311 3.3445 30 1 9.6734 -4.1414 2.2117 31 1 10.3639 -1.2610 1.4416 32 1 11.4154 -2.6852 1.2182 33 1 10.1989 -2.8431 -0.8112 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:27 Heat of formation + Delta-G solvation = -17.787396 kcal Electronic energy + Delta-G solvation = -15723.898875 eV Core-core repulsion = 13135.266644 eV Total energy + Delta-G solvation = -2588.632231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48868 -37.61847 -35.43667 -33.66785 -31.90337 -30.26273 -29.59736 -27.21773 -25.01163 -23.60641 -22.32214 -20.72381 -19.73548 -17.52011 -17.31964 -16.64359 -16.38550 -15.27503 -14.62367 -14.26722 -14.14337 -13.80695 -13.67124 -13.34223 -12.81367 -12.63269 -12.41148 -11.66061 -11.57631 -11.49978 -10.94731 -10.80488 -10.48581 -10.23000 -9.83606 -9.66490 -9.41625 -9.11009 -8.47421 -8.15432 -7.11047 -5.98533 -3.96052 1.70308 1.83000 3.18933 3.36721 3.43821 3.48788 3.50641 4.13562 4.50553 4.52000 4.79508 4.87942 5.00279 5.21358 5.36249 5.43045 5.53030 5.59782 5.73942 5.84858 6.07026 6.40038 6.47464 6.51526 6.59598 6.83325 7.04271 7.08227 7.16437 7.39465 7.55604 7.61010 7.73452 7.86232 8.59848 9.06682 9.64663 11.14943 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.039568 B = 0.005546 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.473012 B = 5047.792775 C = 5144.679474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.065 4.065 11 C -0.074 4.074 12 C -0.108 4.108 13 C -0.153 4.153 14 C 0.118 3.882 15 C 0.056 3.944 16 C -0.107 4.107 17 O -0.315 6.315 18 C 0.045 3.955 19 C 0.089 3.911 20 N -0.762 5.762 21 H 0.262 0.738 22 H 0.017 0.983 23 H 0.012 0.988 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.125 0.875 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.937 -6.083 1.152 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.044 4.044 10 C -0.103 4.103 11 C -0.076 4.076 12 C -0.127 4.127 13 C -0.176 4.176 14 C 0.019 3.981 15 C 0.009 3.991 16 C -0.126 4.126 17 O -0.230 6.230 18 C -0.032 4.032 19 C -0.037 4.037 20 N -0.399 5.399 21 H 0.072 0.928 22 H 0.035 0.965 23 H 0.031 0.969 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.142 0.858 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 21.758 -5.867 1.512 22.586 hybrid contribution 0.863 0.856 -0.495 1.312 sum 22.621 -5.011 1.017 23.192 Atomic orbital electron populations 1.69920 1.06281 1.26808 1.51448 1.25006 0.94691 0.99112 0.94600 0.86808 0.80517 0.83683 0.78535 1.20326 1.21442 1.18856 1.21179 0.89499 0.94483 1.50563 0.90936 1.19564 0.96740 0.91594 0.96546 1.20559 0.87460 1.00226 1.02015 1.20006 0.97382 0.98620 0.91587 1.20846 0.92876 1.00804 0.98125 1.20413 0.94352 1.07471 0.95319 1.17737 0.83674 1.03270 0.93409 1.18409 0.91441 1.06301 0.82953 1.20369 0.90004 1.03139 0.99097 1.86045 1.25016 1.82790 1.29099 1.23187 0.81497 0.98512 1.00002 1.22136 0.96530 1.00031 0.84959 1.44458 1.02408 1.81581 1.11425 0.92809 0.96451 0.96932 0.91658 0.91735 0.85750 0.86344 0.85223 0.87244 0.91937 0.91624 0.89389 0.76226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.17 4.02 -27.88 -0.11 -0.29 16 10 C -0.07 -1.34 5.28 -27.88 -0.15 -1.49 16 11 C -0.07 -1.36 5.13 -104.62 -0.54 -1.90 16 12 C -0.11 -1.77 9.69 -39.56 -0.38 -2.15 16 13 C -0.15 -2.23 9.93 -39.44 -0.39 -2.62 16 14 C 0.12 1.74 6.50 -83.44 -0.54 1.19 16 15 C 0.06 0.93 6.51 -39.06 -0.25 0.67 16 16 C -0.11 -1.91 9.62 -39.42 -0.38 -2.28 16 17 O -0.32 -4.73 10.33 -19.54 -0.20 -4.94 16 18 C 0.04 0.45 7.18 37.44 0.27 0.72 16 19 C 0.09 0.79 7.36 -3.32 -0.02 0.77 16 20 N -0.76 -8.41 5.93 -57.61 -0.34 -8.75 16 21 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 23 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 24 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 25 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 26 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.40 3.47 8.91 -40.82 -0.36 3.11 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -33.14 277.68 -7.70 -40.84 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.52 Total: -0.55 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.93 Total: -20.90 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.43 Total: -36.39 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.20 Total: -4.94 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.14 -7.70 -40.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.054 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds