Wall clock time and date at job start Thu Apr 9 2020 12:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 119.99985 * 2 1 4 4 H 1.48505 * 109.47028 * 269.99673 * 3 2 1 5 5 H 1.48503 * 109.47378 * 29.99930 * 3 2 1 6 6 H 1.48504 * 109.47397 * 150.00137 * 3 2 1 7 7 C 1.37876 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00022 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47269 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.46894 * 180.02562 * 10 9 7 12 12 C 1.38264 * 119.85141 * 269.98946 * 11 10 9 13 13 C 1.38272 * 120.05994 * 180.02562 * 12 11 10 14 14 C 1.38586 * 119.87672 * 0.02562 * 13 12 11 15 15 C 1.39223 * 120.16749 * 359.88833 * 14 13 12 16 16 C 1.38235 * 119.85816 * 90.00000 * 11 10 9 17 17 O 1.35937 * 120.79826 * 180.27707 * 15 14 13 18 18 C 1.42959 * 117.75450 * 339.75992 * 17 15 14 19 19 C 1.53546 * 108.79753 * 49.41622 * 18 17 15 20 20 N 1.40386 * 120.08055 * 179.77748 * 14 13 12 21 21 H 0.96996 * 119.99911 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46830 * 59.99981 * 9 7 2 23 23 H 1.08998 * 109.47101 * 300.00116 * 9 7 2 24 24 H 1.08998 * 109.47339 * 60.00135 * 10 9 7 25 25 H 1.08998 * 109.47026 * 300.00005 * 10 9 7 26 26 H 1.08001 * 119.96952 * 0.05997 * 12 11 10 27 27 H 1.08007 * 120.06577 * 179.97438 * 13 12 11 28 28 H 1.08002 * 119.96850 * 0.22020 * 16 11 10 29 29 H 1.08994 * 109.58572 * 169.20922 * 18 17 15 30 30 H 1.09002 * 109.58473 * 289.62775 * 18 17 15 31 31 H 1.08991 * 109.83422 * 61.34642 * 19 18 17 32 32 H 1.09001 * 109.82978 * 182.30122 * 19 18 17 33 33 H 0.96998 * 121.14868 * 346.30421 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6367 0.0001 11 6 5.5285 -2.6367 0.0001 12 6 6.2167 -2.6370 -1.1990 13 6 7.5995 -2.6375 -1.2040 14 6 8.2941 -2.6382 -0.0048 15 6 7.6033 -2.6361 1.2039 16 6 6.2167 -2.6366 1.1990 17 8 8.2717 -2.6312 2.3876 18 6 9.6336 -3.0660 2.3849 19 6 10.3839 -2.3358 1.2618 20 7 9.6980 -2.6435 -0.0049 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6797 0.8894 23 1 3.8746 -0.6809 -0.8905 24 1 3.6579 -3.1507 -0.8896 25 1 3.6585 -3.1503 0.8903 26 1 5.6738 -2.6362 -2.1327 27 1 8.1372 -2.6381 -2.1407 28 1 5.6738 -2.6401 2.1327 29 1 10.0940 -2.8311 3.3445 30 1 9.6734 -4.1414 2.2117 31 1 10.3639 -1.2610 1.4416 32 1 11.4154 -2.6852 1.2182 33 1 10.1989 -2.8431 -0.8112 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:27 Heat of formation + Delta-G solvation = -39.992709 kcal Electronic energy + Delta-G solvation = -15724.861770 eV Core-core repulsion = 13135.266644 eV Total energy + Delta-G solvation = -2589.595126 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.55791 -38.81772 -36.51541 -35.47830 -33.72435 -31.41796 -31.01613 -28.54335 -26.48850 -24.77237 -23.64035 -22.38799 -20.93794 -19.07689 -18.47430 -18.21292 -17.48465 -16.37323 -16.26674 -15.67460 -15.42034 -14.95753 -14.77016 -14.69446 -14.47447 -14.23219 -13.82762 -13.22691 -13.08112 -12.87274 -12.58233 -11.97631 -11.87508 -11.66814 -11.57496 -11.55703 -11.25890 -10.75444 -10.72937 -9.34379 -8.28897 -8.20242 -6.32018 0.48824 0.59078 1.34885 1.37047 1.50182 2.28055 2.36886 2.57630 2.89705 3.06716 3.72266 3.87697 4.09965 4.16175 4.28729 4.34170 4.46336 4.56103 4.61569 4.74905 4.79191 4.83605 5.02312 5.12677 5.26526 5.32313 5.45979 5.50380 5.65560 5.82659 5.92560 6.07590 6.29846 6.60432 6.75422 6.86618 7.32619 8.88159 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.039568 B = 0.005546 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.473012 B = 5047.792775 C = 5144.679474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.531 4.531 8 H 0.036 0.964 9 C 0.000 4.000 10 C -0.055 4.055 11 C -0.098 4.098 12 C -0.113 4.113 13 C -0.150 4.150 14 C 0.124 3.876 15 C 0.044 3.956 16 C -0.125 4.125 17 O -0.337 6.337 18 C 0.033 3.967 19 C 0.087 3.913 20 N -0.753 5.753 21 H 0.267 0.733 22 H 0.012 0.988 23 H 0.017 0.983 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.134 0.866 27 H 0.151 0.849 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.131 0.869 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.639 -5.439 0.623 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.038 4.038 10 C -0.092 4.092 11 C -0.100 4.100 12 C -0.132 4.132 13 C -0.172 4.172 14 C 0.023 3.977 15 C -0.004 4.004 16 C -0.144 4.144 17 O -0.252 6.252 18 C -0.042 4.042 19 C -0.038 4.038 20 N -0.390 5.390 21 H 0.075 0.925 22 H 0.030 0.970 23 H 0.036 0.964 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.151 0.849 27 H 0.169 0.831 28 H 0.137 0.863 29 H 0.158 0.842 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 25.511 -5.242 0.980 26.063 hybrid contribution -0.198 0.553 -0.278 0.650 sum 25.313 -4.689 0.702 25.753 Atomic orbital electron populations 1.70062 1.08136 1.28116 1.52808 1.25944 0.95562 1.03269 0.94160 0.85711 0.79317 0.78648 0.79341 1.18843 1.20673 1.17836 1.21519 0.91937 0.93289 1.50172 0.94545 1.19458 0.93677 0.94425 0.96227 1.20319 0.89774 0.97478 1.01670 1.19727 0.95634 1.01779 0.92850 1.21002 0.94020 1.00570 0.97603 1.20705 0.93645 1.06243 0.96644 1.17889 0.85572 1.01501 0.92769 1.18448 0.91196 1.06534 0.84239 1.20360 0.91205 1.04327 0.98556 1.86009 1.27517 1.82990 1.28732 1.23605 0.79375 0.98950 1.02291 1.22351 0.98240 0.99800 0.83367 1.44586 1.00977 1.80416 1.13035 0.92458 0.97012 0.96417 0.91591 0.92589 0.84861 0.83114 0.86315 0.84249 0.91502 0.92040 0.85109 0.74566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 2 C 0.01 0.45 5.47 84.65 0.46 0.91 16 3 Si 0.95 46.32 27.47 68.60 1.88 48.20 16 4 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.25 -11.97 6.54 99.48 0.65 -11.32 16 7 C -0.53 -31.89 9.66 25.60 0.25 -31.64 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C 0.00 -0.02 4.02 29.85 0.12 0.10 16 10 C -0.05 -2.33 5.28 29.85 0.16 -2.17 16 11 C -0.10 -3.61 5.13 -19.86 -0.10 -3.71 16 12 C -0.11 -3.56 9.69 22.28 0.22 -3.34 16 13 C -0.15 -3.94 9.93 22.36 0.22 -3.72 16 14 C 0.12 3.32 6.50 38.09 0.25 3.57 16 15 C 0.04 1.40 6.51 22.61 0.15 1.54 16 16 C -0.13 -4.51 9.62 22.37 0.22 -4.30 16 17 O -0.34 -9.68 10.33 -92.84 -0.96 -10.64 16 18 C 0.03 0.57 7.18 72.17 0.52 1.08 16 19 C 0.09 1.20 7.36 86.41 0.64 1.83 16 20 N -0.75 -13.70 5.93 -336.17 -1.99 -15.69 16 21 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 22 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 23 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 24 H 0.07 2.71 8.08 -2.39 -0.02 2.69 16 25 H 0.06 2.39 8.08 -2.39 -0.02 2.37 16 26 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 27 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 28 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 29 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.42 5.29 8.91 -92.71 -0.83 4.46 16 Total: -1.00 -73.23 277.68 2.54 -70.68 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.22 Total: 8.11 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 3.09 Total: -39.84 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -1.69 Total: -76.50 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.96 Total: -10.64 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.20 kcal Total: -73.23 2.54 -70.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.691 kcal (2) G-P(sol) polarization free energy of solvation -73.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds